miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26032 5' -54.6 NC_005342.2 + 736 0.69 0.577546
Target:  5'- cGCGgcagUCGCc---GCCGGCG-CGUUGCu -3'
miRNA:   3'- -CGCa---AGCGucuaCGGCUGCuGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 820 0.68 0.588529
Target:  5'- cGCGUcgcucggCGCGGGUGUuuCGACGacuggcGCGCUGg -3'
miRNA:   3'- -CGCAa------GCGUCUACG--GCUGC------UGCGACg -5'
26032 5' -54.6 NC_005342.2 + 1052 0.66 0.709669
Target:  5'- cGCGUUccaaguccucCGUAGucaUCGGCGcACGCUGCg -3'
miRNA:   3'- -CGCAA----------GCGUCuacGGCUGC-UGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 1097 0.72 0.376142
Target:  5'- cGCGaagUCGguGccGUGCUGcgcGCGACGUUGCa -3'
miRNA:   3'- -CGCa--AGCguC--UACGGC---UGCUGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 1207 0.69 0.527735
Target:  5'- uGCaGUUCGCcGAUGCUGuugaauucgaauuucAUGAUGCUGUu -3'
miRNA:   3'- -CG-CAAGCGuCUACGGC---------------UGCUGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 1315 0.73 0.317613
Target:  5'- cGCGaugcUUCGCGGc-GCUcGCGGCGCUGCa -3'
miRNA:   3'- -CGC----AAGCGUCuaCGGcUGCUGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 1972 0.67 0.654881
Target:  5'- aGCGUcacgcccgCGCGGAugaUGCCGACGucACgGCcGCg -3'
miRNA:   3'- -CGCAa-------GCGUCU---ACGGCUGC--UG-CGaCG- -5'
26032 5' -54.6 NC_005342.2 + 2519 0.69 0.566609
Target:  5'- aCGUUCGCgccgggcucgAGAUGCaGGCGuGCGUUGUg -3'
miRNA:   3'- cGCAAGCG----------UCUACGgCUGC-UGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 2847 0.67 0.687906
Target:  5'- -gGUcUGCGGccuUGCCGACcuGGCGCUGg -3'
miRNA:   3'- cgCAaGCGUCu--ACGGCUG--CUGCGACg -5'
26032 5' -54.6 NC_005342.2 + 3292 0.71 0.431792
Target:  5'- uGCGcgCGCAGGauagcUGCCGAcuucuuCGGCGC-GCg -3'
miRNA:   3'- -CGCaaGCGUCU-----ACGGCU------GCUGCGaCG- -5'
26032 5' -54.6 NC_005342.2 + 4830 0.76 0.215935
Target:  5'- cGCGcgCGCc-GUGCCGAUGcCGCUGCc -3'
miRNA:   3'- -CGCaaGCGucUACGGCUGCuGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 5580 0.74 0.294712
Target:  5'- gGCGcugUUGCGGGcUGCuCGACGggagACGCUGCg -3'
miRNA:   3'- -CGCa--AGCGUCU-ACG-GCUGC----UGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 8157 0.68 0.632741
Target:  5'- cGCGUacUCGguGAgcgGCgucgaGACGuuuugaACGCUGCg -3'
miRNA:   3'- -CGCA--AGCguCUa--CGg----CUGC------UGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 8391 0.66 0.741707
Target:  5'- aCG-UCGCcgauacGGUGCCGcCGACGUUGa -3'
miRNA:   3'- cGCaAGCGu-----CUACGGCuGCUGCGACg -5'
26032 5' -54.6 NC_005342.2 + 8485 0.69 0.555725
Target:  5'- cGCGUUCGCgaAGAagucgcccgUGCCGAacaGCGCgaccgGCa -3'
miRNA:   3'- -CGCAAGCG--UCU---------ACGGCUgc-UGCGa----CG- -5'
26032 5' -54.6 NC_005342.2 + 8659 0.7 0.51288
Target:  5'- gGCGUUCaGCAcggcGAacgUGCCGACcguGACGCcGCu -3'
miRNA:   3'- -CGCAAG-CGU----CU---ACGGCUG---CUGCGaCG- -5'
26032 5' -54.6 NC_005342.2 + 8982 0.82 0.08612
Target:  5'- cGCGUUCGCGGcuUGCCaGGCGGCGC-GCu -3'
miRNA:   3'- -CGCAAGCGUCu-ACGG-CUGCUGCGaCG- -5'
26032 5' -54.6 NC_005342.2 + 9155 0.66 0.752177
Target:  5'- uGCGUUCguucgcgacgGCAG-UGUCGAUcGCGgUGCg -3'
miRNA:   3'- -CGCAAG----------CGUCuACGGCUGcUGCgACG- -5'
26032 5' -54.6 NC_005342.2 + 9492 0.67 0.643817
Target:  5'- uGCGUgcgccugCGCGuuuUGCuCGACGA-GCUGCu -3'
miRNA:   3'- -CGCAa------GCGUcu-ACG-GCUGCUgCGACG- -5'
26032 5' -54.6 NC_005342.2 + 9595 0.71 0.441527
Target:  5'- -gGUUgCGCAccGGcUGCCGGCGGCGCgccUGCg -3'
miRNA:   3'- cgCAA-GCGU--CU-ACGGCUGCUGCG---ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.