miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26035 3' -52.3 NC_005342.2 + 41635 1.13 0.000922
Target:  5'- cCGGCGCAUCGUAAAAUCGCGCGGUGCg -3'
miRNA:   3'- -GCCGCGUAGCAUUUUAGCGCGCCACG- -5'
26035 3' -52.3 NC_005342.2 + 20567 0.81 0.150851
Target:  5'- uCGGCGCGUCGg---GUCGCGCcguGGUGUu -3'
miRNA:   3'- -GCCGCGUAGCauuuUAGCGCG---CCACG- -5'
26035 3' -52.3 NC_005342.2 + 39713 0.8 0.173044
Target:  5'- uGGCGCGuUCGUAGGAcugaucacggaacUCGCGCGGcGCc -3'
miRNA:   3'- gCCGCGU-AGCAUUUU-------------AGCGCGCCaCG- -5'
26035 3' -52.3 NC_005342.2 + 10720 0.8 0.183418
Target:  5'- gCGGCGUAUCGUAc---CGCGCGGcccgGCg -3'
miRNA:   3'- -GCCGCGUAGCAUuuuaGCGCGCCa---CG- -5'
26035 3' -52.3 NC_005342.2 + 22887 0.79 0.198104
Target:  5'- uGGCGC-UCGUGAcgagcagaaGCGCGGUGCu -3'
miRNA:   3'- gCCGCGuAGCAUUuuag-----CGCGCCACG- -5'
26035 3' -52.3 NC_005342.2 + 4330 0.76 0.319929
Target:  5'- uCGGUGCGcuacguggCGUuuGGUCGCGCaGUGCg -3'
miRNA:   3'- -GCCGCGUa-------GCAuuUUAGCGCGcCACG- -5'
26035 3' -52.3 NC_005342.2 + 8906 0.75 0.344705
Target:  5'- gCGGUGCGUCGUAGAAgCGCGCcGccGCc -3'
miRNA:   3'- -GCCGCGUAGCAUUUUaGCGCGcCa-CG- -5'
26035 3' -52.3 NC_005342.2 + 30556 0.75 0.353265
Target:  5'- -aGCGCGUCGUGGc--CGCGCuGUGCg -3'
miRNA:   3'- gcCGCGUAGCAUUuuaGCGCGcCACG- -5'
26035 3' -52.3 NC_005342.2 + 11056 0.75 0.361974
Target:  5'- cCGGCGCgcGUCGUGAGcggcguGUCGCcGCGcUGCg -3'
miRNA:   3'- -GCCGCG--UAGCAUUU------UAGCG-CGCcACG- -5'
26035 3' -52.3 NC_005342.2 + 19186 0.74 0.388984
Target:  5'- uCGGCGCgAUCGUGGGcg-GCGCaGUGCu -3'
miRNA:   3'- -GCCGCG-UAGCAUUUuagCGCGcCACG- -5'
26035 3' -52.3 NC_005342.2 + 41725 0.74 0.402033
Target:  5'- uCGGUGCG-CGUGAAG-CGCGCGGccaacgagcggggcgUGCu -3'
miRNA:   3'- -GCCGCGUaGCAUUUUaGCGCGCC---------------ACG- -5'
26035 3' -52.3 NC_005342.2 + 41435 0.74 0.40771
Target:  5'- aCGGCGCgAUCaacgagGAGAUCgGCGCGG-GCg -3'
miRNA:   3'- -GCCGCG-UAGca----UUUUAG-CGCGCCaCG- -5'
26035 3' -52.3 NC_005342.2 + 23678 0.74 0.410567
Target:  5'- gCGGCuGCAUCGUGgccggcgGAAaaccgagcgauuggcUCGCGCGGguUGCg -3'
miRNA:   3'- -GCCG-CGUAGCAU-------UUU---------------AGCGCGCC--ACG- -5'
26035 3' -52.3 NC_005342.2 + 9939 0.73 0.42699
Target:  5'- cCGGuCGCcgCGUGcacGGUCGCGC-GUGCa -3'
miRNA:   3'- -GCC-GCGuaGCAUu--UUAGCGCGcCACG- -5'
26035 3' -52.3 NC_005342.2 + 2543 0.73 0.446801
Target:  5'- aGGCGUgcGUUGUGGuagcuGAUCGCGCgcccgcucgguaGGUGCa -3'
miRNA:   3'- gCCGCG--UAGCAUU-----UUAGCGCG------------CCACG- -5'
26035 3' -52.3 NC_005342.2 + 24340 0.73 0.446801
Target:  5'- aCGGCGCGUUGaaccAGGUCGCGCGcaucGCu -3'
miRNA:   3'- -GCCGCGUAGCau--UUUAGCGCGCca--CG- -5'
26035 3' -52.3 NC_005342.2 + 37015 0.72 0.509092
Target:  5'- aGGCGacgCGUuccagucGGUCGCgGCGGUGCu -3'
miRNA:   3'- gCCGCguaGCAuu-----UUAGCG-CGCCACG- -5'
26035 3' -52.3 NC_005342.2 + 8921 0.72 0.509092
Target:  5'- cCGGCGCuguccaucgCGUGcgcgggcuGGAUCGUGCGGccgUGCg -3'
miRNA:   3'- -GCCGCGua-------GCAU--------UUUAGCGCGCC---ACG- -5'
26035 3' -52.3 NC_005342.2 + 31303 0.72 0.509092
Target:  5'- gCGGUGCuUCcgcac--CGCGCGGUGCa -3'
miRNA:   3'- -GCCGCGuAGcauuuuaGCGCGCCACG- -5'
26035 3' -52.3 NC_005342.2 + 16847 0.72 0.509092
Target:  5'- gCGGCGCGcaagaaggaguUCGaUGAGAcgaaaCGCGCGGcUGCg -3'
miRNA:   3'- -GCCGCGU-----------AGC-AUUUUa----GCGCGCC-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.