Results 1 - 20 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26035 | 3' | -52.3 | NC_005342.2 | + | 20567 | 0.81 | 0.150851 |
Target: 5'- uCGGCGCGUCGg---GUCGCGCcguGGUGUu -3' miRNA: 3'- -GCCGCGUAGCauuuUAGCGCG---CCACG- -5' |
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26035 | 3' | -52.3 | NC_005342.2 | + | 3506 | 0.69 | 0.653394 |
Target: 5'- uCGGCGUAaaGcGGGAUCaaCGCGGUGCc -3' miRNA: 3'- -GCCGCGUagCaUUUUAGc-GCGCCACG- -5' |
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26035 | 3' | -52.3 | NC_005342.2 | + | 20893 | 0.69 | 0.664633 |
Target: 5'- cCGGCGCAgcgCGUGcuacuuggCGCGCaGGauUGCa -3' miRNA: 3'- -GCCGCGUa--GCAUuuua----GCGCG-CC--ACG- -5' |
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26035 | 3' | -52.3 | NC_005342.2 | + | 6892 | 0.66 | 0.858478 |
Target: 5'- -uGCGCA-CGUuuGAggcgUGCGCGG-GCg -3' miRNA: 3'- gcCGCGUaGCAuuUUa---GCGCGCCaCG- -5' |
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26035 | 3' | -52.3 | NC_005342.2 | + | 41725 | 0.74 | 0.402033 |
Target: 5'- uCGGUGCG-CGUGAAG-CGCGCGGccaacgagcggggcgUGCu -3' miRNA: 3'- -GCCGCGUaGCAUUUUaGCGCGCC---------------ACG- -5' |
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26035 | 3' | -52.3 | NC_005342.2 | + | 41435 | 0.74 | 0.40771 |
Target: 5'- aCGGCGCgAUCaacgagGAGAUCgGCGCGG-GCg -3' miRNA: 3'- -GCCGCG-UAGca----UUUUAG-CGCGCCaCG- -5' |
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26035 | 3' | -52.3 | NC_005342.2 | + | 37015 | 0.72 | 0.509092 |
Target: 5'- aGGCGacgCGUuccagucGGUCGCgGCGGUGCu -3' miRNA: 3'- gCCGCguaGCAuu-----UUAGCG-CGCCACG- -5' |
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26035 | 3' | -52.3 | NC_005342.2 | + | 8921 | 0.72 | 0.509092 |
Target: 5'- cCGGCGCuguccaucgCGUGcgcgggcuGGAUCGUGCGGccgUGCg -3' miRNA: 3'- -GCCGCGua-------GCAU--------UUUAGCGCGCC---ACG- -5' |
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26035 | 3' | -52.3 | NC_005342.2 | + | 37122 | 0.71 | 0.563632 |
Target: 5'- uCGGCGC-UCGcggu-UUGCGCGGcgUGCa -3' miRNA: 3'- -GCCGCGuAGCauuuuAGCGCGCC--ACG- -5' |
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26035 | 3' | -52.3 | NC_005342.2 | + | 20953 | 0.7 | 0.642136 |
Target: 5'- aCGGgGCGgaCGcAAAcgCGCGCGGcGCg -3' miRNA: 3'- -GCCgCGUa-GCaUUUuaGCGCGCCaCG- -5' |
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26035 | 3' | -52.3 | NC_005342.2 | + | 10547 | 0.7 | 0.6196 |
Target: 5'- gGGCGCAUCGca-----G-GCGGUGCu -3' miRNA: 3'- gCCGCGUAGCauuuuagCgCGCCACG- -5' |
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26035 | 3' | -52.3 | NC_005342.2 | + | 13600 | 0.71 | 0.552577 |
Target: 5'- uCGGCGagcacuUCGUGc-AUCGCGCGGUa- -3' miRNA: 3'- -GCCGCgu----AGCAUuuUAGCGCGCCAcg -5' |
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26035 | 3' | -52.3 | NC_005342.2 | + | 39713 | 0.8 | 0.173044 |
Target: 5'- uGGCGCGuUCGUAGGAcugaucacggaacUCGCGCGGcGCc -3' miRNA: 3'- gCCGCGU-AGCAUUUU-------------AGCGCGCCaCG- -5' |
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26035 | 3' | -52.3 | NC_005342.2 | + | 31208 | 0.7 | 0.6196 |
Target: 5'- uCGGCGUucUCGUAcuGUCGCGCGu--- -3' miRNA: 3'- -GCCGCGu-AGCAUuuUAGCGCGCcacg -5' |
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26035 | 3' | -52.3 | NC_005342.2 | + | 10720 | 0.8 | 0.183418 |
Target: 5'- gCGGCGUAUCGUAc---CGCGCGGcccgGCg -3' miRNA: 3'- -GCCGCGUAGCAUuuuaGCGCGCCa---CG- -5' |
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26035 | 3' | -52.3 | NC_005342.2 | + | 41822 | 0.71 | 0.541587 |
Target: 5'- aGGCGUGUCGcGAGGU-GCGCcaguugccGGUGCa -3' miRNA: 3'- gCCGCGUAGCaUUUUAgCGCG--------CCACG- -5' |
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26035 | 3' | -52.3 | NC_005342.2 | + | 7656 | 0.7 | 0.62974 |
Target: 5'- cCGGCgaacccgaccaugGCGUCGUAGcgguGAUCgGCGCGGacaGCg -3' miRNA: 3'- -GCCG-------------CGUAGCAUU----UUAG-CGCGCCa--CG- -5' |
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26035 | 3' | -52.3 | NC_005342.2 | + | 9310 | 0.69 | 0.657893 |
Target: 5'- uCGGCGCuuUCGUGuucgucgucggCGCGCGGcGUc -3' miRNA: 3'- -GCCGCGu-AGCAUuuua-------GCGCGCCaCG- -5' |
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26035 | 3' | -52.3 | NC_005342.2 | + | 22887 | 0.79 | 0.198104 |
Target: 5'- uGGCGC-UCGUGAcgagcagaaGCGCGGUGCu -3' miRNA: 3'- gCCGCGuAGCAUUuuag-----CGCGCCACG- -5' |
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26035 | 3' | -52.3 | NC_005342.2 | + | 23678 | 0.74 | 0.410567 |
Target: 5'- gCGGCuGCAUCGUGgccggcgGAAaaccgagcgauuggcUCGCGCGGguUGCg -3' miRNA: 3'- -GCCG-CGUAGCAU-------UUU---------------AGCGCGCC--ACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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