miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26035 3' -52.3 NC_005342.2 + 720 0.66 0.841039
Target:  5'- cCGGCGCcUCGUuca---GCGCGGcagucGCc -3'
miRNA:   3'- -GCCGCGuAGCAuuuuagCGCGCCa----CG- -5'
26035 3' -52.3 NC_005342.2 + 1139 0.68 0.720113
Target:  5'- gCGGCaGCAuuUCGagcgcgaguAGGUCGCG-GGUGCg -3'
miRNA:   3'- -GCCG-CGU--AGCau-------UUUAGCGCgCCACG- -5'
26035 3' -52.3 NC_005342.2 + 1249 0.67 0.803482
Target:  5'- uGGCGCGcCGccugg-CGCGCGuUGCg -3'
miRNA:   3'- gCCGCGUaGCauuuuaGCGCGCcACG- -5'
26035 3' -52.3 NC_005342.2 + 1748 0.67 0.773303
Target:  5'- cCGGCGCGcuugcagccuUUGUAAuAGUCGCGCaGUa- -3'
miRNA:   3'- -GCCGCGU----------AGCAUU-UUAGCGCGcCAcg -5'
26035 3' -52.3 NC_005342.2 + 1952 0.66 0.82268
Target:  5'- cCGGCGaUAUCGUGccAGUUGU-CGGUGUa -3'
miRNA:   3'- -GCCGC-GUAGCAUu-UUAGCGcGCCACG- -5'
26035 3' -52.3 NC_005342.2 + 2543 0.73 0.446801
Target:  5'- aGGCGUgcGUUGUGGuagcuGAUCGCGCgcccgcucgguaGGUGCa -3'
miRNA:   3'- gCCGCG--UAGCAUU-----UUAGCGCG------------CCACG- -5'
26035 3' -52.3 NC_005342.2 + 3181 0.67 0.773303
Target:  5'- gGGCGCGgc-------CGCGCGGUGUu -3'
miRNA:   3'- gCCGCGUagcauuuuaGCGCGCCACG- -5'
26035 3' -52.3 NC_005342.2 + 3247 0.67 0.773303
Target:  5'- -aGCGCGcCGUGguAGAUCGUaUGGUGCu -3'
miRNA:   3'- gcCGCGUaGCAU--UUUAGCGcGCCACG- -5'
26035 3' -52.3 NC_005342.2 + 3358 0.7 0.642136
Target:  5'- uGGCGCAgcgagUCGggcagGuuGUCGCGCGcG-GCg -3'
miRNA:   3'- gCCGCGU-----AGCa----UuuUAGCGCGC-CaCG- -5'
26035 3' -52.3 NC_005342.2 + 3506 0.69 0.653394
Target:  5'- uCGGCGUAaaGcGGGAUCaaCGCGGUGCc -3'
miRNA:   3'- -GCCGCGUagCaUUUUAGc-GCGCCACG- -5'
26035 3' -52.3 NC_005342.2 + 4330 0.76 0.319929
Target:  5'- uCGGUGCGcuacguggCGUuuGGUCGCGCaGUGCg -3'
miRNA:   3'- -GCCGCGUa-------GCAuuUUAGCGCGcCACG- -5'
26035 3' -52.3 NC_005342.2 + 4706 0.66 0.83197
Target:  5'- aGGCGCGgucaUCGUcgagauacgccAGAAUCGCuuuggcGUGGUGg -3'
miRNA:   3'- gCCGCGU----AGCA-----------UUUUAGCG------CGCCACg -5'
26035 3' -52.3 NC_005342.2 + 5193 0.69 0.687002
Target:  5'- uCGGCGUcgguGUCGUAGAAcUCGacauGCGG-GCc -3'
miRNA:   3'- -GCCGCG----UAGCAUUUU-AGCg---CGCCaCG- -5'
26035 3' -52.3 NC_005342.2 + 6680 0.7 0.6016
Target:  5'- uGGCGCguugaagccgGUCGUGAGcAUCGCGacgcugacgaugugcCGGUGUu -3'
miRNA:   3'- gCCGCG----------UAGCAUUU-UAGCGC---------------GCCACG- -5'
26035 3' -52.3 NC_005342.2 + 6892 0.66 0.858478
Target:  5'- -uGCGCA-CGUuuGAggcgUGCGCGG-GCg -3'
miRNA:   3'- gcCGCGUaGCAuuUUa---GCGCGCCaCG- -5'
26035 3' -52.3 NC_005342.2 + 7361 0.66 0.849878
Target:  5'- cCGGCGCA--GUAgauaccGAGUCGCGCGa--- -3'
miRNA:   3'- -GCCGCGUagCAU------UUUAGCGCGCcacg -5'
26035 3' -52.3 NC_005342.2 + 7656 0.7 0.62974
Target:  5'- cCGGCgaacccgaccaugGCGUCGUAGcgguGAUCgGCGCGGacaGCg -3'
miRNA:   3'- -GCCG-------------CGUAGCAUU----UUAG-CGCGCCa--CG- -5'
26035 3' -52.3 NC_005342.2 + 8622 0.68 0.720113
Target:  5'- uCGGCGCGgcgccCGgcuugcUCGUGaCGGUGCc -3'
miRNA:   3'- -GCCGCGUa----GCauuuu-AGCGC-GCCACG- -5'
26035 3' -52.3 NC_005342.2 + 8906 0.75 0.344705
Target:  5'- gCGGUGCGUCGUAGAAgCGCGCcGccGCc -3'
miRNA:   3'- -GCCGCGUAGCAUUUUaGCGCGcCa-CG- -5'
26035 3' -52.3 NC_005342.2 + 8921 0.72 0.509092
Target:  5'- cCGGCGCuguccaucgCGUGcgcgggcuGGAUCGUGCGGccgUGCg -3'
miRNA:   3'- -GCCGCGua-------GCAU--------UUUAGCGCGCC---ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.