miRNA display CGI


Results 21 - 40 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26035 5' -58.9 NC_005342.2 + 28454 0.71 0.224697
Target:  5'- aCGGCcacgaGCGCcGCCagcgCGCCAGCGCc -3'
miRNA:   3'- -GCCGa----CGCGuCGGaaa-GUGGUCGCGc -5'
26035 5' -58.9 NC_005342.2 + 18274 0.71 0.230633
Target:  5'- gCGGCaGCGCGGCCgcgcUCGgCAcGCGCu -3'
miRNA:   3'- -GCCGaCGCGUCGGaa--AGUgGU-CGCGc -5'
26035 5' -58.9 NC_005342.2 + 38894 0.71 0.236701
Target:  5'- cCGuGCUGCGCGcGCUg--CACCGGCaGCa -3'
miRNA:   3'- -GC-CGACGCGU-CGGaaaGUGGUCG-CGc -5'
26035 5' -58.9 NC_005342.2 + 29689 0.71 0.236701
Target:  5'- gCGGCcGCGCuGCC----GCCAGCGCc -3'
miRNA:   3'- -GCCGaCGCGuCGGaaagUGGUCGCGc -5'
26035 5' -58.9 NC_005342.2 + 46033 0.7 0.242902
Target:  5'- ---aUGCaGCGGCCggugUCGCCGGUGCGg -3'
miRNA:   3'- gccgACG-CGUCGGaa--AGUGGUCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 20440 0.7 0.242902
Target:  5'- uCGGCgGCGCgaAGCCUg-CGCCGGuCGUGa -3'
miRNA:   3'- -GCCGaCGCG--UCGGAaaGUGGUC-GCGC- -5'
26035 5' -58.9 NC_005342.2 + 30807 0.7 0.242902
Target:  5'- aGGUucgGCGCcuGGCCcgUCAgCGGCGCGa -3'
miRNA:   3'- gCCGa--CGCG--UCGGaaAGUgGUCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 33582 0.7 0.242902
Target:  5'- -cGCUGCuGCAGCCgagUCGgCCAGCGaCa -3'
miRNA:   3'- gcCGACG-CGUCGGaa-AGU-GGUCGC-Gc -5'
26035 5' -58.9 NC_005342.2 + 30677 0.7 0.24542
Target:  5'- -cGCUGCGcCGGCCggcgUUCACgucgaaggcaaucugCAGCGCGu -3'
miRNA:   3'- gcCGACGC-GUCGGa---AAGUG---------------GUCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 22066 0.7 0.25571
Target:  5'- gCGGCgaaGCGCGGCgCUUggcgcucgcgCACCaAGCGCu -3'
miRNA:   3'- -GCCGa--CGCGUCG-GAAa---------GUGG-UCGCGc -5'
26035 5' -58.9 NC_005342.2 + 11888 0.7 0.262319
Target:  5'- cCGGCaUGCGCAGCggcgcgcgCGCCAuuacGCGCGc -3'
miRNA:   3'- -GCCG-ACGCGUCGgaaa----GUGGU----CGCGC- -5'
26035 5' -58.9 NC_005342.2 + 27207 0.7 0.269066
Target:  5'- aGGC-GCGCAGCCgcgUCggcgauguccGgCAGCGCGc -3'
miRNA:   3'- gCCGaCGCGUCGGaa-AG----------UgGUCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 19330 0.7 0.269066
Target:  5'- aCGGCaaguacGCGcCGGCCUg-CGCCgAGCGCGa -3'
miRNA:   3'- -GCCGa-----CGC-GUCGGAaaGUGG-UCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 5440 0.7 0.269066
Target:  5'- -cGUUGCGCAGCCacUUCGCUucGGCGUa -3'
miRNA:   3'- gcCGACGCGUCGGa-AAGUGG--UCGCGc -5'
26035 5' -58.9 NC_005342.2 + 40560 0.7 0.269066
Target:  5'- aGGC-GCGC-GCCUUcuggUCGCCGGCGaUGg -3'
miRNA:   3'- gCCGaCGCGuCGGAA----AGUGGUCGC-GC- -5'
26035 5' -58.9 NC_005342.2 + 1615 0.7 0.275952
Target:  5'- uCGGCgGCGUAGCCcugaaugCGCU-GCGCGg -3'
miRNA:   3'- -GCCGaCGCGUCGGaaa----GUGGuCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 795 0.7 0.275952
Target:  5'- gCGGC-GaCGUAGCUgcggUCGCCuGCGCGu -3'
miRNA:   3'- -GCCGaC-GCGUCGGaa--AGUGGuCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 41310 0.69 0.282979
Target:  5'- gCGGCggaUGCGC-GCCUgcucgagcgCGCCgAGCGCGc -3'
miRNA:   3'- -GCCG---ACGCGuCGGAaa-------GUGG-UCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 38354 0.69 0.282979
Target:  5'- aGGC-GCGCcGCCggcaGCCGGUGCGc -3'
miRNA:   3'- gCCGaCGCGuCGGaaagUGGUCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 2637 0.69 0.289423
Target:  5'- uCGGCgGCgacaccgGCAGCCUgcagcgucgCGCCGGCgGCGg -3'
miRNA:   3'- -GCCGaCG-------CGUCGGAaa-------GUGGUCG-CGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.