Results 1 - 20 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26035 | 5' | -58.9 | NC_005342.2 | + | 41672 | 1.08 | 0.000376 |
Target: 5'- aCGGCUGCGCAGCCUUUCACCAGCGCGc -3' miRNA: 3'- -GCCGACGCGUCGGAAAGUGGUCGCGC- -5' |
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26035 | 5' | -58.9 | NC_005342.2 | + | 6292 | 0.81 | 0.043156 |
Target: 5'- aGGCUGCGCAGCCgugaggacgaccgCACC-GCGCGa -3' miRNA: 3'- gCCGACGCGUCGGaaa----------GUGGuCGCGC- -5' |
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26035 | 5' | -58.9 | NC_005342.2 | + | 9403 | 0.79 | 0.057506 |
Target: 5'- gGGCUGCGCAcGCCguccggUUCGCCGucuuGCGCGc -3' miRNA: 3'- gCCGACGCGU-CGGa-----AAGUGGU----CGCGC- -5' |
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26035 | 5' | -58.9 | NC_005342.2 | + | 30048 | 0.76 | 0.104731 |
Target: 5'- aGGC-GCGCGGCCg--CACCGGCGg- -3' miRNA: 3'- gCCGaCGCGUCGGaaaGUGGUCGCgc -5' |
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26035 | 5' | -58.9 | NC_005342.2 | + | 16947 | 0.75 | 0.120478 |
Target: 5'- uCGGCgcagGUGCGGCCggUUCGCCGGCa-- -3' miRNA: 3'- -GCCGa---CGCGUCGGa-AAGUGGUCGcgc -5' |
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26035 | 5' | -58.9 | NC_005342.2 | + | 28504 | 0.74 | 0.130957 |
Target: 5'- gCGGCgGCGCGGCUgcccaUCACguaCAGCGCGu -3' miRNA: 3'- -GCCGaCGCGUCGGaa---AGUG---GUCGCGC- -5' |
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26035 | 5' | -58.9 | NC_005342.2 | + | 47103 | 0.74 | 0.150305 |
Target: 5'- aGGCUGCaGCuGCC----GCCAGCGCGc -3' miRNA: 3'- gCCGACG-CGuCGGaaagUGGUCGCGC- -5' |
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26035 | 5' | -58.9 | NC_005342.2 | + | 34083 | 0.73 | 0.152794 |
Target: 5'- aCGGCcgccGCGCAGCCcgugccggccgacUUCGCgCGGCGCGg -3' miRNA: 3'- -GCCGa---CGCGUCGGa------------AAGUG-GUCGCGC- -5' |
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26035 | 5' | -58.9 | NC_005342.2 | + | 15469 | 0.73 | 0.154474 |
Target: 5'- gGGCUGCucGCGGCgg-UCACCGGCgGCGc -3' miRNA: 3'- gCCGACG--CGUCGgaaAGUGGUCG-CGC- -5' |
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26035 | 5' | -58.9 | NC_005342.2 | + | 39023 | 0.73 | 0.163128 |
Target: 5'- gGGCUG-GCAGCCgaUUCGCuCGGCgGCGg -3' miRNA: 3'- gCCGACgCGUCGGa-AAGUG-GUCG-CGC- -5' |
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26035 | 5' | -58.9 | NC_005342.2 | + | 20758 | 0.73 | 0.166711 |
Target: 5'- gCGGCUGCGC-GCCUgaacgucgacaCGCCuGCGCu -3' miRNA: 3'- -GCCGACGCGuCGGAaa---------GUGGuCGCGc -5' |
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26035 | 5' | -58.9 | NC_005342.2 | + | 29441 | 0.72 | 0.191756 |
Target: 5'- cCGGCUGCGaaGGCCg--CugCAGCGUc -3' miRNA: 3'- -GCCGACGCg-UCGGaaaGugGUCGCGc -5' |
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26035 | 5' | -58.9 | NC_005342.2 | + | 47730 | 0.72 | 0.196936 |
Target: 5'- uCGGCggUGUGCGGCUgugcuaCAUCGGCGCGu -3' miRNA: 3'- -GCCG--ACGCGUCGGaaa---GUGGUCGCGC- -5' |
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26035 | 5' | -58.9 | NC_005342.2 | + | 28226 | 0.72 | 0.202238 |
Target: 5'- aCGGCagcgGCGCcGUCUUgcacgcCACCAGCGCc -3' miRNA: 3'- -GCCGa---CGCGuCGGAAa-----GUGGUCGCGc -5' |
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26035 | 5' | -58.9 | NC_005342.2 | + | 45287 | 0.71 | 0.207663 |
Target: 5'- uCGGcCUGU-CGGCCgc-CGCCGGCGCGa -3' miRNA: 3'- -GCC-GACGcGUCGGaaaGUGGUCGCGC- -5' |
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26035 | 5' | -58.9 | NC_005342.2 | + | 28705 | 0.71 | 0.207663 |
Target: 5'- -aGCUGCGCGGCCgccggAUCGGCGUGu -3' miRNA: 3'- gcCGACGCGUCGGaaag-UGGUCGCGC- -5' |
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26035 | 5' | -58.9 | NC_005342.2 | + | 7598 | 0.71 | 0.207663 |
Target: 5'- uCGGCcGCuuCGGCCUgaUACCAGCGUGg -3' miRNA: 3'- -GCCGaCGc-GUCGGAaaGUGGUCGCGC- -5' |
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26035 | 5' | -58.9 | NC_005342.2 | + | 2886 | 0.71 | 0.213213 |
Target: 5'- aCGuGCUGCGCGGCCgucguaACCgucAGCGUGc -3' miRNA: 3'- -GC-CGACGCGUCGGaaag--UGG---UCGCGC- -5' |
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26035 | 5' | -58.9 | NC_005342.2 | + | 720 | 0.71 | 0.218891 |
Target: 5'- cCGGCgccucguucaGCGCGGCagucgcCGCCGGCGCGu -3' miRNA: 3'- -GCCGa---------CGCGUCGgaaa--GUGGUCGCGC- -5' |
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26035 | 5' | -58.9 | NC_005342.2 | + | 35836 | 0.71 | 0.218891 |
Target: 5'- aGGUUgGCGaCGGCCUgcgCgACCGGCGCa -3' miRNA: 3'- gCCGA-CGC-GUCGGAaa-G-UGGUCGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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