miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26035 5' -58.9 NC_005342.2 + 6292 0.81 0.043156
Target:  5'- aGGCUGCGCAGCCgugaggacgaccgCACC-GCGCGa -3'
miRNA:   3'- gCCGACGCGUCGGaaa----------GUGGuCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 11888 0.7 0.262319
Target:  5'- cCGGCaUGCGCAGCggcgcgcgCGCCAuuacGCGCGc -3'
miRNA:   3'- -GCCG-ACGCGUCGgaaa----GUGGU----CGCGC- -5'
26035 5' -58.9 NC_005342.2 + 40560 0.7 0.269066
Target:  5'- aGGC-GCGC-GCCUUcuggUCGCCGGCGaUGg -3'
miRNA:   3'- gCCGaCGCGuCGGAA----AGUGGUCGC-GC- -5'
26035 5' -58.9 NC_005342.2 + 31969 0.66 0.482872
Target:  5'- uGGCaGCaGCGGCCgaaaGCCuuccggauGGCGCGg -3'
miRNA:   3'- gCCGaCG-CGUCGGaaagUGG--------UCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 47103 0.74 0.150305
Target:  5'- aGGCUGCaGCuGCC----GCCAGCGCGc -3'
miRNA:   3'- gCCGACG-CGuCGGaaagUGGUCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 15469 0.73 0.154474
Target:  5'- gGGCUGCucGCGGCgg-UCACCGGCgGCGc -3'
miRNA:   3'- gCCGACG--CGUCGgaaAGUGGUCG-CGC- -5'
26035 5' -58.9 NC_005342.2 + 20758 0.73 0.166711
Target:  5'- gCGGCUGCGC-GCCUgaacgucgacaCGCCuGCGCu -3'
miRNA:   3'- -GCCGACGCGuCGGAaa---------GUGGuCGCGc -5'
26035 5' -58.9 NC_005342.2 + 47730 0.72 0.196936
Target:  5'- uCGGCggUGUGCGGCUgugcuaCAUCGGCGCGu -3'
miRNA:   3'- -GCCG--ACGCGUCGGaaa---GUGGUCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 35836 0.71 0.218891
Target:  5'- aGGUUgGCGaCGGCCUgcgCgACCGGCGCa -3'
miRNA:   3'- gCCGA-CGC-GUCGGAaa-G-UGGUCGCGc -5'
26035 5' -58.9 NC_005342.2 + 33582 0.7 0.242902
Target:  5'- -cGCUGCuGCAGCCgagUCGgCCAGCGaCa -3'
miRNA:   3'- gcCGACG-CGUCGGaa-AGU-GGUCGC-Gc -5'
26035 5' -58.9 NC_005342.2 + 38894 0.71 0.236701
Target:  5'- cCGuGCUGCGCGcGCUg--CACCGGCaGCa -3'
miRNA:   3'- -GC-CGACGCGU-CGGaaaGUGGUCG-CGc -5'
26035 5' -58.9 NC_005342.2 + 2886 0.71 0.213213
Target:  5'- aCGuGCUGCGCGGCCgucguaACCgucAGCGUGc -3'
miRNA:   3'- -GC-CGACGCGUCGGaaag--UGG---UCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 9403 0.79 0.057506
Target:  5'- gGGCUGCGCAcGCCguccggUUCGCCGucuuGCGCGc -3'
miRNA:   3'- gCCGACGCGU-CGGa-----AAGUGGU----CGCGC- -5'
26035 5' -58.9 NC_005342.2 + 20440 0.7 0.242902
Target:  5'- uCGGCgGCGCgaAGCCUg-CGCCGGuCGUGa -3'
miRNA:   3'- -GCCGaCGCG--UCGGAaaGUGGUC-GCGC- -5'
26035 5' -58.9 NC_005342.2 + 30048 0.76 0.104731
Target:  5'- aGGC-GCGCGGCCg--CACCGGCGg- -3'
miRNA:   3'- gCCGaCGCGUCGGaaaGUGGUCGCgc -5'
26035 5' -58.9 NC_005342.2 + 28705 0.71 0.207663
Target:  5'- -aGCUGCGCGGCCgccggAUCGGCGUGu -3'
miRNA:   3'- gcCGACGCGUCGGaaag-UGGUCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 30807 0.7 0.242902
Target:  5'- aGGUucgGCGCcuGGCCcgUCAgCGGCGCGa -3'
miRNA:   3'- gCCGa--CGCG--UCGGaaAGUgGUCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 5440 0.7 0.269066
Target:  5'- -cGUUGCGCAGCCacUUCGCUucGGCGUa -3'
miRNA:   3'- gcCGACGCGUCGGa-AAGUGG--UCGCGc -5'
26035 5' -58.9 NC_005342.2 + 28504 0.74 0.130957
Target:  5'- gCGGCgGCGCGGCUgcccaUCACguaCAGCGCGu -3'
miRNA:   3'- -GCCGaCGCGUCGGaa---AGUG---GUCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 39023 0.73 0.163128
Target:  5'- gGGCUG-GCAGCCgaUUCGCuCGGCgGCGg -3'
miRNA:   3'- gCCGACgCGUCGGa-AAGUG-GUCG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.