miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26035 5' -58.9 NC_005342.2 + 605 0.67 0.414608
Target:  5'- uCGGCgacGCGCAGCUgaaugaaCGCCuGCGgGu -3'
miRNA:   3'- -GCCGa--CGCGUCGGaaa----GUGGuCGCgC- -5'
26035 5' -58.9 NC_005342.2 + 720 0.71 0.218891
Target:  5'- cCGGCgccucguucaGCGCGGCagucgcCGCCGGCGCGu -3'
miRNA:   3'- -GCCGa---------CGCGUCGgaaa--GUGGUCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 795 0.7 0.275952
Target:  5'- gCGGC-GaCGUAGCUgcggUCGCCuGCGCGu -3'
miRNA:   3'- -GCCGaC-GCGUCGGaa--AGUGGuCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 1291 0.68 0.352603
Target:  5'- uCGGCgcGCGCcGCCUUggCugC-GCGCGa -3'
miRNA:   3'- -GCCGa-CGCGuCGGAAa-GugGuCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 1615 0.7 0.275952
Target:  5'- uCGGCgGCGUAGCCcugaaugCGCU-GCGCGg -3'
miRNA:   3'- -GCCGaCGCGUCGGaaa----GUGGuCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 2637 0.69 0.289423
Target:  5'- uCGGCgGCgacaccgGCAGCCUgcagcgucgCGCCGGCgGCGg -3'
miRNA:   3'- -GCCGaCG-------CGUCGGAaa-------GUGGUCG-CGC- -5'
26035 5' -58.9 NC_005342.2 + 2886 0.71 0.213213
Target:  5'- aCGuGCUGCGCGGCCgucguaACCgucAGCGUGc -3'
miRNA:   3'- -GC-CGACGCGUCGGaaag--UGG---UCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 3203 0.68 0.328114
Target:  5'- gCGuCUGCGC-GCCgccagCGCCAcGCGCGg -3'
miRNA:   3'- -GCcGACGCGuCGGaaa--GUGGU-CGCGC- -5'
26035 5' -58.9 NC_005342.2 + 5139 0.66 0.453898
Target:  5'- uCGaGCaGCGCAGCUUgcgccugauugaacaUCGCCugcaGGCGCGg -3'
miRNA:   3'- -GC-CGaCGCGUCGGAa--------------AGUGG----UCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 5440 0.7 0.269066
Target:  5'- -cGUUGCGCAGCCacUUCGCUucGGCGUa -3'
miRNA:   3'- gcCGACGCGUCGGa-AAGUGG--UCGCGc -5'
26035 5' -58.9 NC_005342.2 + 5517 0.66 0.462791
Target:  5'- uGGCcgGCGaCGGCUUggCGCgAGUGCa -3'
miRNA:   3'- gCCGa-CGC-GUCGGAaaGUGgUCGCGc -5'
26035 5' -58.9 NC_005342.2 + 6292 0.81 0.043156
Target:  5'- aGGCUGCGCAGCCgugaggacgaccgCACC-GCGCGa -3'
miRNA:   3'- gCCGACGCGUCGGaaa----------GUGGuCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 7598 0.71 0.207663
Target:  5'- uCGGCcGCuuCGGCCUgaUACCAGCGUGg -3'
miRNA:   3'- -GCCGaCGc-GUCGGAaaGUGGUCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 7822 0.66 0.452915
Target:  5'- gCGGcCUGCGcCGGCCaUUUCcaGCUcGCGCu -3'
miRNA:   3'- -GCC-GACGC-GUCGG-AAAG--UGGuCGCGc -5'
26035 5' -58.9 NC_005342.2 + 8754 0.66 0.443156
Target:  5'- uGGCgaaGuCGCcggcaauGCCUUgCGCCGGCGUGa -3'
miRNA:   3'- gCCGa--C-GCGu------CGGAAaGUGGUCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 8906 0.67 0.423999
Target:  5'- gCGGCUucguucgcgccgGCGCuGUCcaUCGCguGCGCGg -3'
miRNA:   3'- -GCCGA------------CGCGuCGGaaAGUGguCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 9403 0.79 0.057506
Target:  5'- gGGCUGCGCAcGCCguccggUUCGCCGucuuGCGCGc -3'
miRNA:   3'- gCCGACGCGU-CGGa-----AAGUGGU----CGCGC- -5'
26035 5' -58.9 NC_005342.2 + 9593 0.69 0.290146
Target:  5'- cCGGUUGCGCAccggcuGCCggcggcgCGCCuGCGCc -3'
miRNA:   3'- -GCCGACGCGU------CGGaaa----GUGGuCGCGc -5'
26035 5' -58.9 NC_005342.2 + 11198 0.67 0.387219
Target:  5'- uCGG--GCGCGGCUccUUGCCGGCGCu -3'
miRNA:   3'- -GCCgaCGCGUCGGaaAGUGGUCGCGc -5'
26035 5' -58.9 NC_005342.2 + 11318 0.66 0.452915
Target:  5'- aGGCgGCGCGGUUcgucgUCACCuugccGCGCu -3'
miRNA:   3'- gCCGaCGCGUCGGaa---AGUGGu----CGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.