miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26038 5' -52.8 NC_005342.2 + 13075 0.66 0.819971
Target:  5'- gCAACUGCCgGCGAUGgCGGUgCGa--- -3'
miRNA:   3'- -GUUGAUGGgCGUUGCgGUCA-GCauga -5'
26038 5' -52.8 NC_005342.2 + 44596 0.66 0.819971
Target:  5'- aCAAcCUGCCCGacucgcuGCGCCAGcugaUCGaGCUg -3'
miRNA:   3'- -GUU-GAUGGGCgu-----UGCGGUC----AGCaUGA- -5'
26038 5' -52.8 NC_005342.2 + 37710 0.66 0.819971
Target:  5'- -cACUGCCCGCGuCGCuCGGcuuccaGUGCg -3'
miRNA:   3'- guUGAUGGGCGUuGCG-GUCag----CAUGa -5'
26038 5' -52.8 NC_005342.2 + 26812 0.66 0.819971
Target:  5'- cCGACggcccgGCCUGCAGCGUC-GUagcgaGUGCUg -3'
miRNA:   3'- -GUUGa-----UGGGCGUUGCGGuCAg----CAUGA- -5'
26038 5' -52.8 NC_005342.2 + 32779 0.66 0.819971
Target:  5'- uGACcgGCCUGC--UGCCGGcCGUGCg -3'
miRNA:   3'- gUUGa-UGGGCGuuGCGGUCaGCAUGa -5'
26038 5' -52.8 NC_005342.2 + 2331 0.66 0.810357
Target:  5'- cCAGCUcggcaagcACCUcgaGCAGCGCCucGUCGUAg- -3'
miRNA:   3'- -GUUGA--------UGGG---CGUUGCGGu-CAGCAUga -5'
26038 5' -52.8 NC_005342.2 + 495 0.66 0.809384
Target:  5'- gCGACgUGCCgGCGagcgugaACGCUucGUCGUACUu -3'
miRNA:   3'- -GUUG-AUGGgCGU-------UGCGGu-CAGCAUGA- -5'
26038 5' -52.8 NC_005342.2 + 22230 0.66 0.800544
Target:  5'- cCGACUgGCCUGCAGCugGCCGG-CGaGCa -3'
miRNA:   3'- -GUUGA-UGGGCGUUG--CGGUCaGCaUGa -5'
26038 5' -52.8 NC_005342.2 + 37640 0.66 0.800544
Target:  5'- aAACUGCCUGCGuCGUgGGaaGUGCa -3'
miRNA:   3'- gUUGAUGGGCGUuGCGgUCagCAUGa -5'
26038 5' -52.8 NC_005342.2 + 47231 0.66 0.789535
Target:  5'- gCGACUGCCgCGCugaacgaGGCGCCGGcCG-GCg -3'
miRNA:   3'- -GUUGAUGG-GCG-------UUGCGGUCaGCaUGa -5'
26038 5' -52.8 NC_005342.2 + 19510 0.66 0.780371
Target:  5'- uGGCcgACCUGCGuuucuacggcAUGCCggaAGUCGUGCUg -3'
miRNA:   3'- gUUGa-UGGGCGU----------UGCGG---UCAGCAUGA- -5'
26038 5' -52.8 NC_005342.2 + 36334 0.67 0.770034
Target:  5'- gCGACUACUgGCAGCGCUAcuUCG-ACa -3'
miRNA:   3'- -GUUGAUGGgCGUUGCGGUc-AGCaUGa -5'
26038 5' -52.8 NC_005342.2 + 6802 0.67 0.767948
Target:  5'- cCGACUcGCCCGCGucgagcaGCGCCuGUucgaucaugugcgCGUGCUc -3'
miRNA:   3'- -GUUGA-UGGGCGU-------UGCGGuCA-------------GCAUGA- -5'
26038 5' -52.8 NC_005342.2 + 35793 0.67 0.748919
Target:  5'- gAGCUgGCCCGUGacgcggcgcugcGCGCCAGccaCGUACg -3'
miRNA:   3'- gUUGA-UGGGCGU------------UGCGGUCa--GCAUGa -5'
26038 5' -52.8 NC_005342.2 + 7424 0.67 0.738167
Target:  5'- aGACgGCCCG--ACGCCGuGUCGUAUUc -3'
miRNA:   3'- gUUGaUGGGCguUGCGGU-CAGCAUGA- -5'
26038 5' -52.8 NC_005342.2 + 15858 0.67 0.738167
Target:  5'- cCGAgaACCCcgacGCGGCGCUgaacGUCGUGCUg -3'
miRNA:   3'- -GUUgaUGGG----CGUUGCGGu---CAGCAUGA- -5'
26038 5' -52.8 NC_005342.2 + 2162 0.67 0.727301
Target:  5'- --uUUGCCCGaCAGCuuGCC-GUCGUACg -3'
miRNA:   3'- guuGAUGGGC-GUUG--CGGuCAGCAUGa -5'
26038 5' -52.8 NC_005342.2 + 42379 0.68 0.705281
Target:  5'- gAGCaGCCCGCAacaGCGCCGaUCGU-CUc -3'
miRNA:   3'- gUUGaUGGGCGU---UGCGGUcAGCAuGA- -5'
26038 5' -52.8 NC_005342.2 + 31040 0.68 0.705281
Target:  5'- aCGGC-GCCCGCAAUGCCGG-CcaGCUu -3'
miRNA:   3'- -GUUGaUGGGCGUUGCGGUCaGcaUGA- -5'
26038 5' -52.8 NC_005342.2 + 23162 0.68 0.682956
Target:  5'- ----cGCCCGUcACGUCGGUCGgUGCg -3'
miRNA:   3'- guugaUGGGCGuUGCGGUCAGC-AUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.