miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2622 3' -58.4 NC_001491.2 + 105131 0.66 0.800669
Target:  5'- gGGGCCgCGGCGggggucucuacGGCAGgcuuuggGGGCUCCu -3'
miRNA:   3'- aCUCGGgGUCGUa----------UCGUCa------CUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 56598 0.66 0.773261
Target:  5'- -cGGCCCUcGCAguuuUGGUGGcGAGCUCCa -3'
miRNA:   3'- acUCGGGGuCGU----AUCGUCaCUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 48832 0.66 0.773261
Target:  5'- cGAGgCCCAG---GGCccugGGUGGGCCuCCa -3'
miRNA:   3'- aCUCgGGGUCguaUCG----UCACUCGG-GG- -5'
2622 3' -58.4 NC_001491.2 + 4660 0.66 0.773261
Target:  5'- aGGGCUCCGGCccGGCGGaGAagccauCCCCg -3'
miRNA:   3'- aCUCGGGGUCGuaUCGUCaCUc-----GGGG- -5'
2622 3' -58.4 NC_001491.2 + 34534 0.66 0.754347
Target:  5'- cGGGCCCUGGgaccCAUGcCAGccgaGGGCCCCg -3'
miRNA:   3'- aCUCGGGGUC----GUAUcGUCa---CUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 83292 0.67 0.748586
Target:  5'- --uGcCCCCAGCuggguGCGGUuuuagccacggcugcGGGCCCCg -3'
miRNA:   3'- acuC-GGGGUCGuau--CGUCA---------------CUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 53527 0.67 0.744725
Target:  5'- gGGGCgaCCCgagAGCGcGGUAGUGAcGCCUCg -3'
miRNA:   3'- aCUCG--GGG---UCGUaUCGUCACU-CGGGG- -5'
2622 3' -58.4 NC_001491.2 + 34015 0.67 0.741818
Target:  5'- -cGGUCCCAGCAgcccUcaucguccucgcccGGCGGcGAGCCCUu -3'
miRNA:   3'- acUCGGGGUCGU----A--------------UCGUCaCUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 2835 0.67 0.725195
Target:  5'- cUGGGCCgCCGGCuccaggGGCucgGAGCgCCg -3'
miRNA:   3'- -ACUCGG-GGUCGua----UCGucaCUCGgGG- -5'
2622 3' -58.4 NC_001491.2 + 70191 0.67 0.715306
Target:  5'- cUGAGCCCUGGCccuGCccauGUcGGCCCUg -3'
miRNA:   3'- -ACUCGGGGUCGuauCGu---CAcUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 124605 0.67 0.715306
Target:  5'- -cGGCCugcuaauucacaCCAGCGUcGGCGGUGAGCagguauacauaCCCa -3'
miRNA:   3'- acUCGG------------GGUCGUA-UCGUCACUCG-----------GGG- -5'
2622 3' -58.4 NC_001491.2 + 41163 0.67 0.705346
Target:  5'- -uAGCCCUAGCGuUAGCGcu-AGCCCUa -3'
miRNA:   3'- acUCGGGGUCGU-AUCGUcacUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 11283 0.67 0.705346
Target:  5'- aGGGCgCCAGCGUA-CAGggGAGUguaCCCa -3'
miRNA:   3'- aCUCGgGGUCGUAUcGUCa-CUCG---GGG- -5'
2622 3' -58.4 NC_001491.2 + 114252 0.68 0.685251
Target:  5'- cUGGGCCCUGGCcagcugcguGUGGCGuGUGAGCa-- -3'
miRNA:   3'- -ACUCGGGGUCG---------UAUCGU-CACUCGggg -5'
2622 3' -58.4 NC_001491.2 + 67572 0.68 0.675133
Target:  5'- cUGGGCCUgGGCGUuugGGguGaGAGCCUg -3'
miRNA:   3'- -ACUCGGGgUCGUA---UCguCaCUCGGGg -5'
2622 3' -58.4 NC_001491.2 + 1441 0.68 0.654802
Target:  5'- cGGGgCUCGGC--GGCGGgGAGCCUCg -3'
miRNA:   3'- aCUCgGGGUCGuaUCGUCaCUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 9583 0.68 0.644605
Target:  5'- cGAGCCCCGGCugggggAGCGGU-AGCg-- -3'
miRNA:   3'- aCUCGGGGUCGua----UCGUCAcUCGggg -5'
2622 3' -58.4 NC_001491.2 + 31824 0.69 0.613987
Target:  5'- cGAGCCCCgcggagggaaGGCGaAGCGGUc-GCCCUc -3'
miRNA:   3'- aCUCGGGG----------UCGUaUCGUCAcuCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 34395 0.69 0.592614
Target:  5'- cGAGCCCCuggagccGGCGgccCAGgccgGAGCCUCg -3'
miRNA:   3'- aCUCGGGG-------UCGUaucGUCa---CUCGGGG- -5'
2622 3' -58.4 NC_001491.2 + 91044 0.71 0.504143
Target:  5'- cUGuAGCCUUagAGCAUGucaaaGGUGAGCCCCg -3'
miRNA:   3'- -AC-UCGGGG--UCGUAUcg---UCACUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.