miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2623 3' -60.7 NC_001491.2 + 115429 0.66 0.675626
Target:  5'- -cGGGCuCCAGCGUGGauaucguugucGUGuAGUCCCg -3'
miRNA:   3'- ucCCCG-GGUCGUAUCgu---------CAC-UCGGGG- -5'
2623 3' -60.7 NC_001491.2 + 129811 0.66 0.657628
Target:  5'- aGGGGGUCCAGuCGUAGacauGGUucGCCUg -3'
miRNA:   3'- -UCCCCGGGUC-GUAUCg---UCAcuCGGGg -5'
2623 3' -60.7 NC_001491.2 + 11280 0.66 0.647598
Target:  5'- uAGaGGGCgCCAGCGUA-CAGggGAGUguaCCCa -3'
miRNA:   3'- -UC-CCCG-GGUCGUAUcGUCa-CUCG---GGG- -5'
2623 3' -60.7 NC_001491.2 + 28550 0.67 0.617468
Target:  5'- cGGGGcGCCaCGGCGgggcGCAGaacGCCCCu -3'
miRNA:   3'- -UCCC-CGG-GUCGUau--CGUCacuCGGGG- -5'
2623 3' -60.7 NC_001491.2 + 69717 0.67 0.617468
Target:  5'- cGGcGGUugCCAGCAcgggAGUAGUGcGCUCCg -3'
miRNA:   3'- uCC-CCG--GGUCGUa---UCGUCACuCGGGG- -5'
2623 3' -60.7 NC_001491.2 + 148642 0.67 0.601426
Target:  5'- cGGGGCgCAGCAUacaggccggcuauucAGCGG-GGGCgcacagCCCa -3'
miRNA:   3'- uCCCCGgGUCGUA---------------UCGUCaCUCG------GGG- -5'
2623 3' -60.7 NC_001491.2 + 136302 0.67 0.587434
Target:  5'- cGGGGCUggCGGCcuugGGCGGUGgcAGCgCCa -3'
miRNA:   3'- uCCCCGG--GUCGua--UCGUCAC--UCGgGG- -5'
2623 3' -60.7 NC_001491.2 + 1605 0.67 0.587434
Target:  5'- cGGGGCgCAGCcaGGCcccGAGUCCCc -3'
miRNA:   3'- uCCCCGgGUCGuaUCGucaCUCGGGG- -5'
2623 3' -60.7 NC_001491.2 + 1356 0.67 0.587434
Target:  5'- -cGGGCuCCGGCAggcacAGCuccGUG-GCCCCc -3'
miRNA:   3'- ucCCCG-GGUCGUa----UCGu--CACuCGGGG- -5'
2623 3' -60.7 NC_001491.2 + 53526 0.68 0.577476
Target:  5'- uGGGGcGaCCCgagAGCGcGGUAGUGAcGCCUCg -3'
miRNA:   3'- -UCCC-C-GGG---UCGUaUCGUCACU-CGGGG- -5'
2623 3' -60.7 NC_001491.2 + 100754 0.68 0.577476
Target:  5'- cGGGGCCgucccggacgCGGCGcAGCGGgGAaCCCCg -3'
miRNA:   3'- uCCCCGG----------GUCGUaUCGUCaCUcGGGG- -5'
2623 3' -60.7 NC_001491.2 + 1067 0.68 0.557679
Target:  5'- cGGGGUUCAGCGUcagcggauggaGGCGG-GAGUCUa -3'
miRNA:   3'- uCCCCGGGUCGUA-----------UCGUCaCUCGGGg -5'
2623 3' -60.7 NC_001491.2 + 148892 0.68 0.547852
Target:  5'- uGGGaaaCCCAGCGaguugggaaaucUAGUGGgcUGGGCCCCa -3'
miRNA:   3'- uCCCc--GGGUCGU------------AUCGUC--ACUCGGGG- -5'
2623 3' -60.7 NC_001491.2 + 97001 0.68 0.53808
Target:  5'- cGGGaaGCCCGGCGUcgggagGGCcGUGGGCUaCCa -3'
miRNA:   3'- uCCC--CGGGUCGUA------UCGuCACUCGG-GG- -5'
2623 3' -60.7 NC_001491.2 + 32762 0.69 0.509147
Target:  5'- cGGGGCggCGGCAgcAGCAGcaucGGCCCCg -3'
miRNA:   3'- uCCCCGg-GUCGUa-UCGUCac--UCGGGG- -5'
2623 3' -60.7 NC_001491.2 + 5274 0.69 0.50629
Target:  5'- cGGGGCCacggaggaguggacCaucuucAGCAUcGCGGcGAGCCCCg -3'
miRNA:   3'- uCCCCGG--------------G------UCGUAuCGUCaCUCGGGG- -5'
2623 3' -60.7 NC_001491.2 + 35918 0.69 0.503438
Target:  5'- cGGGG-CCGGCGUguggagcuGGUGGUugagcaccccggcccGAGCCCCg -3'
miRNA:   3'- uCCCCgGGUCGUA--------UCGUCA---------------CUCGGGG- -5'
2623 3' -60.7 NC_001491.2 + 146196 0.69 0.48089
Target:  5'- cAGGaauuGGCCaccgAGCAUAGCGuGUGuagcGCCCCg -3'
miRNA:   3'- -UCC----CCGGg---UCGUAUCGU-CACu---CGGGG- -5'
2623 3' -60.7 NC_001491.2 + 133270 0.69 0.47164
Target:  5'- gAGGGGCUCuGCGgGGCGuuuuGCCCCa -3'
miRNA:   3'- -UCCCCGGGuCGUaUCGUcacuCGGGG- -5'
2623 3' -60.7 NC_001491.2 + 3580 0.7 0.462481
Target:  5'- uGGGGUCCAGUccggGGaCGGcgGAcGCCCCg -3'
miRNA:   3'- uCCCCGGGUCGua--UC-GUCa-CU-CGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.