miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26253 3' -52.1 NC_005345.2 + 30619 0.81 0.161626
Target:  5'- -aGCAGCccaCCGGUGCACAUGGcgCCg -3'
miRNA:   3'- cgUGUUGaa-GGCCGCGUGUACCuaGG- -5'
26253 3' -52.1 NC_005345.2 + 9002 0.68 0.725809
Target:  5'- cGCuCAACUUgucggccUCGGUGCGCG-GGAUCa -3'
miRNA:   3'- -CGuGUUGAA-------GGCCGCGUGUaCCUAGg -5'
26253 3' -52.1 NC_005345.2 + 22019 0.69 0.715964
Target:  5'- aGCuCGACgccggCCGGUGCcgcCGUGGcgCCg -3'
miRNA:   3'- -CGuGUUGaa---GGCCGCGu--GUACCuaGG- -5'
26253 3' -52.1 NC_005345.2 + 21556 0.69 0.693846
Target:  5'- cGCGCGugaugaucaccuGCcgguaaUCCGGCGCccggccGCcgGGGUCCg -3'
miRNA:   3'- -CGUGU------------UGa-----AGGCCGCG------UGuaCCUAGG- -5'
26253 3' -52.1 NC_005345.2 + 38100 0.69 0.682686
Target:  5'- cGCACGcagaaACUUCgGGUGCGaGUGGGcCCc -3'
miRNA:   3'- -CGUGU-----UGAAGgCCGCGUgUACCUaGG- -5'
26253 3' -52.1 NC_005345.2 + 47472 0.69 0.681567
Target:  5'- cGCuCAACUUCCGGCcGUACGacgccgcUGGAa-- -3'
miRNA:   3'- -CGuGUUGAAGGCCG-CGUGU-------ACCUagg -5'
26253 3' -52.1 NC_005345.2 + 17848 0.7 0.64895
Target:  5'- cGCGCAGCagcgcCCGGCGgGaauccUcgGGGUCCg -3'
miRNA:   3'- -CGUGUUGaa---GGCCGCgU-----GuaCCUAGG- -5'
26253 3' -52.1 NC_005345.2 + 19459 0.7 0.626358
Target:  5'- aGCGCGAUcgcguucgCCGGCGUgauccGCGUGGAcacgCCg -3'
miRNA:   3'- -CGUGUUGaa------GGCCGCG-----UGUACCUa---GG- -5'
26253 3' -52.1 NC_005345.2 + 12473 0.72 0.515249
Target:  5'- gGCAgCAGCgcgUCCGuGCGCACGcgggcGGAUCg -3'
miRNA:   3'- -CGU-GUUGa--AGGC-CGCGUGUa----CCUAGg -5'
26253 3' -52.1 NC_005345.2 + 45702 0.68 0.726899
Target:  5'- -gACAGgUcCCGGCGgGCggGGGUCUg -3'
miRNA:   3'- cgUGUUgAaGGCCGCgUGuaCCUAGG- -5'
26253 3' -52.1 NC_005345.2 + 31214 0.67 0.778805
Target:  5'- uGCGCAcccggguGCggCCgGGUGUACGgcGGGUCCg -3'
miRNA:   3'- -CGUGU-------UGaaGG-CCGCGUGUa-CCUAGG- -5'
26253 3' -52.1 NC_005345.2 + 7941 0.67 0.779828
Target:  5'- gGUAgAAgUcgagCCGGCGgGCggGGAUCCc -3'
miRNA:   3'- -CGUgUUgAa---GGCCGCgUGuaCCUAGG- -5'
26253 3' -52.1 NC_005345.2 + 37032 0.66 0.855555
Target:  5'- -aGCGGCacCgGGCGaGCcgGGAUCCg -3'
miRNA:   3'- cgUGUUGaaGgCCGCgUGuaCCUAGG- -5'
26253 3' -52.1 NC_005345.2 + 22302 0.66 0.846849
Target:  5'- gGCACGuugcccGCgcUCGGCGCGCcgGGugCCg -3'
miRNA:   3'- -CGUGU------UGaaGGCCGCGUGuaCCuaGG- -5'
26253 3' -52.1 NC_005345.2 + 42786 0.66 0.846849
Target:  5'- gGC-CGACUguagCCGGUGCGgAUGcGG-CCa -3'
miRNA:   3'- -CGuGUUGAa---GGCCGCGUgUAC-CUaGG- -5'
26253 3' -52.1 NC_005345.2 + 5075 0.66 0.846849
Target:  5'- aGCuGCAGCccaUCGGCGCuCGgcGGGUCCa -3'
miRNA:   3'- -CG-UGUUGaa-GGCCGCGuGUa-CCUAGG- -5'
26253 3' -52.1 NC_005345.2 + 30893 0.67 0.819346
Target:  5'- gGCgACGGCgcggCCGGCgagcaGCACcgGGA-CCa -3'
miRNA:   3'- -CG-UGUUGaa--GGCCG-----CGUGuaCCUaGG- -5'
26253 3' -52.1 NC_005345.2 + 5207 0.67 0.80975
Target:  5'- gGCACGGCcggcCCGGCGCuACAcgccgucgGGGUgCCc -3'
miRNA:   3'- -CGUGUUGaa--GGCCGCG-UGUa-------CCUA-GG- -5'
26253 3' -52.1 NC_005345.2 + 2787 0.67 0.799957
Target:  5'- gGUACGGCUUgUCGGCGCcgGCGUGcgcucGAUCg -3'
miRNA:   3'- -CGUGUUGAA-GGCCGCG--UGUAC-----CUAGg -5'
26253 3' -52.1 NC_005345.2 + 40262 0.67 0.789979
Target:  5'- aCGgGGCg-CCGGCGgGCAUGaGUCCg -3'
miRNA:   3'- cGUgUUGaaGGCCGCgUGUACcUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.