Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26255 | 3' | -60 | NC_005345.2 | + | 29600 | 0.66 | 0.418379 |
Target: 5'- --aGCAGCUGaACACgGUCCUGUCCuCGa -3' miRNA: 3'- cccCGUCGGCaUGUG-UAGGACGGG-GC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 36493 | 0.67 | 0.408333 |
Target: 5'- gGGGGCgcaguucAGCCaGUGCGCccgcUCCgagGCCCgGu -3' miRNA: 3'- -CCCCG-------UCGG-CAUGUGu---AGGa--CGGGgC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 10859 | 0.67 | 0.400227 |
Target: 5'- uGGGCGgacuGCCGcacgcgGCGCGUCCcgUGCCCg- -3' miRNA: 3'- cCCCGU----CGGCa-----UGUGUAGG--ACGGGgc -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 24272 | 0.67 | 0.398439 |
Target: 5'- aGGcGGCAGCCGaucagcgcgguCGCGUCCgucacGCCgCGg -3' miRNA: 3'- -CC-CCGUCGGCau---------GUGUAGGa----CGGgGC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 42057 | 0.67 | 0.391341 |
Target: 5'- cGGGCcguuucgaccGUCGUGCACuUCCggGCCUCGg -3' miRNA: 3'- cCCCGu---------CGGCAUGUGuAGGa-CGGGGC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 6932 | 0.67 | 0.391341 |
Target: 5'- -cGGCGcGCgCGUACAUGUCCgcgGCCCa- -3' miRNA: 3'- ccCCGU-CG-GCAUGUGUAGGa--CGGGgc -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 3050 | 0.67 | 0.391341 |
Target: 5'- aGGGUcGCCGcgUGgAUGUCCgcgcagGCCCCGg -3' miRNA: 3'- cCCCGuCGGC--AUgUGUAGGa-----CGGGGC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 34151 | 0.67 | 0.382585 |
Target: 5'- cGGGCAGUCG-ACGgAUCCgaGUCCuCGg -3' miRNA: 3'- cCCCGUCGGCaUGUgUAGGa-CGGG-GC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 10256 | 0.67 | 0.37396 |
Target: 5'- cGGGGCAGCguuCGUuCACG-CCgcgauCCCCGa -3' miRNA: 3'- -CCCCGUCG---GCAuGUGUaGGac---GGGGC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 13378 | 0.67 | 0.37396 |
Target: 5'- --aGCAGCgCGggaauCGaGUCCUGCCCCGg -3' miRNA: 3'- cccCGUCG-GCau---GUgUAGGACGGGGC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 24933 | 0.67 | 0.37396 |
Target: 5'- uGGGaGCAGCCGc-CGCGaUCgaacucgGCCCCGa -3' miRNA: 3'- -CCC-CGUCGGCauGUGUaGGa------CGGGGC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 46033 | 0.67 | 0.37396 |
Target: 5'- cGGGGCGGCCccucggUAUGUCCgggGCCCg- -3' miRNA: 3'- -CCCCGUCGGcau---GUGUAGGa--CGGGgc -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 8396 | 0.67 | 0.37396 |
Target: 5'- -cGGCGGCCGaACG-GUCC-GCCCCa -3' miRNA: 3'- ccCCGUCGGCaUGUgUAGGaCGGGGc -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 22068 | 0.67 | 0.365468 |
Target: 5'- -cGGCAGaCagGUACGCGUCggugauCUGCCCCa -3' miRNA: 3'- ccCCGUC-Gg-CAUGUGUAG------GACGGGGc -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 27072 | 0.67 | 0.365468 |
Target: 5'- uGGGGCAGaucaCCG-ACGCGUaCCUGUCugCCGu -3' miRNA: 3'- -CCCCGUC----GGCaUGUGUA-GGACGG--GGC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 40755 | 0.67 | 0.365468 |
Target: 5'- uGGGGCGGaCCGUucgGCcgCCgGCCgCGg -3' miRNA: 3'- -CCCCGUC-GGCAug-UGuaGGaCGGgGC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 9386 | 0.68 | 0.3408 |
Target: 5'- cGGGCAGCCGcuguuCAgCCUGCCgCa -3' miRNA: 3'- cCCCGUCGGCaugu-GUaGGACGGgGc -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 40871 | 0.68 | 0.3408 |
Target: 5'- aGGGCGGCCGcuucgaccggGCACAUgCUGCggacguugaUCCGg -3' miRNA: 3'- cCCCGUCGGCa---------UGUGUAgGACG---------GGGC- -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 34799 | 0.68 | 0.339999 |
Target: 5'- cGGGucgcgguccucgcGCAcGCCGUGCg---CCUGCCCCu -3' miRNA: 3'- -CCC-------------CGU-CGGCAUGuguaGGACGGGGc -5' |
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26255 | 3' | -60 | NC_005345.2 | + | 39211 | 0.68 | 0.31736 |
Target: 5'- cGGGUuggcgaccgucgGGCCG-ACGCcgaCUGCCCCGg -3' miRNA: 3'- cCCCG------------UCGGCaUGUGuagGACGGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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