miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26257 5' -50.3 NC_005345.2 + 47077 1.09 0.002862
Target:  5'- aGUUCACCGAAGAGCGCAUUUUCGCCGc -3'
miRNA:   3'- -CAAGUGGCUUCUCGCGUAAAAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 44605 0.77 0.331691
Target:  5'- -gUCAUCGAGGAGCGgCGgcagCGCCGg -3'
miRNA:   3'- caAGUGGCUUCUCGC-GUaaaaGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 31235 0.74 0.507358
Target:  5'- -aUCACCGAGGAgucgaaccguguGCGCGg---CGCCGu -3'
miRNA:   3'- caAGUGGCUUCU------------CGCGUaaaaGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 47175 0.73 0.529384
Target:  5'- -cUCACCGAGGAGCaGCAgcgUUCcaaGCUGa -3'
miRNA:   3'- caAGUGGCUUCUCG-CGUaa-AAG---CGGC- -5'
26257 5' -50.3 NC_005345.2 + 18673 0.73 0.551752
Target:  5'- -cUCACCGAAGAGgGUgccgUCGUCGu -3'
miRNA:   3'- caAGUGGCUUCUCgCGuaaaAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 19347 0.73 0.563045
Target:  5'- -cUCGCCGggGgcgAGCGCGUagUCGUCu -3'
miRNA:   3'- caAGUGGCuuC---UCGCGUAaaAGCGGc -5'
26257 5' -50.3 NC_005345.2 + 28604 0.72 0.608732
Target:  5'- --aCACCGAAucGCGCAUgccgggcgugUCGCCGc -3'
miRNA:   3'- caaGUGGCUUcuCGCGUAaa--------AGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 7458 0.72 0.631748
Target:  5'- ---uGCCGAAGcuCGCGUagUCGCCGg -3'
miRNA:   3'- caagUGGCUUCucGCGUAaaAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 12644 0.71 0.654765
Target:  5'- aGUUCGCCG--GGGCGCGgucggcCGCCGu -3'
miRNA:   3'- -CAAGUGGCuuCUCGCGUaaaa--GCGGC- -5'
26257 5' -50.3 NC_005345.2 + 13030 0.71 0.67769
Target:  5'- --cCGCCGAAGAGCGac--UUgGCCGc -3'
miRNA:   3'- caaGUGGCUUCUCGCguaaAAgCGGC- -5'
26257 5' -50.3 NC_005345.2 + 21016 0.71 0.684535
Target:  5'- cGUUCGCCGGcccGGGUGCGUUccucggcacgcgCGCCGg -3'
miRNA:   3'- -CAAGUGGCUu--CUCGCGUAAaa----------GCGGC- -5'
26257 5' -50.3 NC_005345.2 + 35884 0.71 0.689088
Target:  5'- -gUCGCCGAcGAGCuGC----UCGCCGg -3'
miRNA:   3'- caAGUGGCUuCUCG-CGuaaaAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 35870 0.7 0.699295
Target:  5'- --gCACCGgcGAGCugccgguGCAgcggUUCGCCGa -3'
miRNA:   3'- caaGUGGCuuCUCG-------CGUaa--AAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 30640 0.7 0.700426
Target:  5'- --gCGCCGAGgacgccGAGCGCAgcgccUUUGCCGa -3'
miRNA:   3'- caaGUGGCUU------CUCGCGUaa---AAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 17300 0.7 0.711691
Target:  5'- cGUUCGCCGcAGGuGCGCcgcaccCGCCGc -3'
miRNA:   3'- -CAAGUGGC-UUCuCGCGuaaaa-GCGGC- -5'
26257 5' -50.3 NC_005345.2 + 42530 0.7 0.711691
Target:  5'- --gCACCGccGGGCGCAaccgcCGCCGg -3'
miRNA:   3'- caaGUGGCuuCUCGCGUaaaa-GCGGC- -5'
26257 5' -50.3 NC_005345.2 + 23614 0.7 0.732849
Target:  5'- --aCGCCGgcGGaccgggcacggcuGCGCAUggugUUCGCCGa -3'
miRNA:   3'- caaGUGGCuuCU-------------CGCGUAa---AAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 19991 0.69 0.755765
Target:  5'- gGUUCGCCGAGG-GCGaCAggcgggcUGCCGg -3'
miRNA:   3'- -CAAGUGGCUUCuCGC-GUaaaa---GCGGC- -5'
26257 5' -50.3 NC_005345.2 + 23051 0.69 0.777025
Target:  5'- --cCGCCGAGGucGUGCAca-UCGCCGc -3'
miRNA:   3'- caaGUGGCUUCu-CGCGUaaaAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 10122 0.69 0.787415
Target:  5'- gGUUC-CCGGAGAcGCGCAgca--GCCa -3'
miRNA:   3'- -CAAGuGGCUUCU-CGCGUaaaagCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.