miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26257 5' -50.3 NC_005345.2 + 5867 0.68 0.845621
Target:  5'- -cUCGCCGAGGA-CGUcg--UCGCCa -3'
miRNA:   3'- caAGUGGCUUCUcGCGuaaaAGCGGc -5'
26257 5' -50.3 NC_005345.2 + 7458 0.72 0.631748
Target:  5'- ---uGCCGAAGcuCGCGUagUCGCCGg -3'
miRNA:   3'- caagUGGCUUCucGCGUAaaAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 8254 0.66 0.928376
Target:  5'- -gUCGCCGGGuucGAGCGCgggguucacgaGUgcccuuaggUUCGCCGu -3'
miRNA:   3'- caAGUGGCUU---CUCGCG-----------UAa--------AAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 9053 0.66 0.909284
Target:  5'- --aCACCGAGcaGGCGCGg---CGCCa -3'
miRNA:   3'- caaGUGGCUUc-UCGCGUaaaaGCGGc -5'
26257 5' -50.3 NC_005345.2 + 9775 0.67 0.871561
Target:  5'- --cCGCCGAGGcguagcugcgacAGCGUg--UUCGCCGc -3'
miRNA:   3'- caaGUGGCUUC------------UCGCGuaaAAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 10007 0.66 0.908601
Target:  5'- --gCGCCGguGAGCGggagcgacucccaCAggUUCGCCGu -3'
miRNA:   3'- caaGUGGCuuCUCGC-------------GUaaAAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 10049 0.66 0.922314
Target:  5'- -cUCGCCGAGGAcGCGaucggGUUcgaCGCCGu -3'
miRNA:   3'- caAGUGGCUUCU-CGCg----UAAaa-GCGGC- -5'
26257 5' -50.3 NC_005345.2 + 10122 0.69 0.787415
Target:  5'- gGUUC-CCGGAGAcGCGCAgca--GCCa -3'
miRNA:   3'- -CAAGuGGCUUCU-CGCGUaaaagCGGc -5'
26257 5' -50.3 NC_005345.2 + 10252 0.69 0.787415
Target:  5'- --aCACCGggGcAGCGUucGUUcaCGCCGc -3'
miRNA:   3'- caaGUGGCuuC-UCGCG--UAAaaGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 10596 0.69 0.797629
Target:  5'- ---uGCCGguGGGCGCGUa--CGCCGa -3'
miRNA:   3'- caagUGGCuuCUCGCGUAaaaGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 12538 0.68 0.827086
Target:  5'- -cUCGCgGAGcGGGCGCAg---CGCUGg -3'
miRNA:   3'- caAGUGgCUU-CUCGCGUaaaaGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 12644 0.71 0.654765
Target:  5'- aGUUCGCCG--GGGCGCGgucggcCGCCGu -3'
miRNA:   3'- -CAAGUGGCuuCUCGCGUaaaa--GCGGC- -5'
26257 5' -50.3 NC_005345.2 + 13030 0.71 0.67769
Target:  5'- --cCGCCGAAGAGCGac--UUgGCCGc -3'
miRNA:   3'- caaGUGGCUUCUCGCguaaAAgCGGC- -5'
26257 5' -50.3 NC_005345.2 + 13635 0.66 0.922314
Target:  5'- ---aACCGGAcGGCGCGgcgugagCGCCGa -3'
miRNA:   3'- caagUGGCUUcUCGCGUaaaa---GCGGC- -5'
26257 5' -50.3 NC_005345.2 + 17300 0.7 0.711691
Target:  5'- cGUUCGCCGcAGGuGCGCcgcaccCGCCGc -3'
miRNA:   3'- -CAAGUGGC-UUCuCGCGuaaaa-GCGGC- -5'
26257 5' -50.3 NC_005345.2 + 17739 0.67 0.887511
Target:  5'- -aUCGCCG-GGuGCGCAc--UCGCCc -3'
miRNA:   3'- caAGUGGCuUCuCGCGUaaaAGCGGc -5'
26257 5' -50.3 NC_005345.2 + 17881 0.66 0.90232
Target:  5'- --cCGCCGu--GGCGUAg--UCGCCGa -3'
miRNA:   3'- caaGUGGCuucUCGCGUaaaAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 18026 0.66 0.922314
Target:  5'- --aCGCCGGGcGAGCGCAggaaCGCgGc -3'
miRNA:   3'- caaGUGGCUU-CUCGCGUaaaaGCGgC- -5'
26257 5' -50.3 NC_005345.2 + 18539 0.68 0.836471
Target:  5'- --gCACCGGugggcugcucGGGGCGC----UCGCCGg -3'
miRNA:   3'- caaGUGGCU----------UCUCGCGuaaaAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 18619 0.67 0.871561
Target:  5'- -gUCACCGGcacgcAGAGCGgCAgcacccUCGCCc -3'
miRNA:   3'- caAGUGGCU-----UCUCGC-GUaaa---AGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.