miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26257 5' -50.3 NC_005345.2 + 47175 0.73 0.529384
Target:  5'- -cUCACCGAGGAGCaGCAgcgUUCcaaGCUGa -3'
miRNA:   3'- caAGUGGCUUCUCG-CGUaa-AAG---CGGC- -5'
26257 5' -50.3 NC_005345.2 + 47077 1.09 0.002862
Target:  5'- aGUUCACCGAAGAGCGCAUUUUCGCCGc -3'
miRNA:   3'- -CAAGUGGCUUCUCGCGUAAAAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 46305 0.66 0.909284
Target:  5'- cUUCGCCGcccGAGCGCA----CGCUGu -3'
miRNA:   3'- cAAGUGGCuu-CUCGCGUaaaaGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 45273 0.68 0.845621
Target:  5'- -gUCGgCGGAGAgcaGCGCAgggaCGCCGa -3'
miRNA:   3'- caAGUgGCUUCU---CGCGUaaaaGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 45088 0.66 0.922314
Target:  5'- --gCACCGAGGcauaccgugucGGCGCucgucggCGCCGu -3'
miRNA:   3'- caaGUGGCUUC-----------UCGCGuaaaa--GCGGC- -5'
26257 5' -50.3 NC_005345.2 + 44605 0.77 0.331691
Target:  5'- -gUCAUCGAGGAGCGgCGgcagCGCCGg -3'
miRNA:   3'- caAGUGGCUUCUCGC-GUaaaaGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 44156 0.67 0.879675
Target:  5'- -gUCACCauGgcGAGCGCGU--UCGuCCGc -3'
miRNA:   3'- caAGUGG--CuuCUCGCGUAaaAGC-GGC- -5'
26257 5' -50.3 NC_005345.2 + 42957 0.67 0.887511
Target:  5'- aGggCGCCGcGGAacGCGCGgaacugCGCCGg -3'
miRNA:   3'- -CaaGUGGCuUCU--CGCGUaaaa--GCGGC- -5'
26257 5' -50.3 NC_005345.2 + 42530 0.7 0.711691
Target:  5'- --gCACCGccGGGCGCAaccgcCGCCGg -3'
miRNA:   3'- caaGUGGCuuCUCGCGUaaaa-GCGGC- -5'
26257 5' -50.3 NC_005345.2 + 40284 0.66 0.90232
Target:  5'- ----uCCGGAGAGCGuCAUgccgCGCCc -3'
miRNA:   3'- caaguGGCUUCUCGC-GUAaaa-GCGGc -5'
26257 5' -50.3 NC_005345.2 + 40051 0.67 0.887511
Target:  5'- -aUCACCGc-GAcGUGCGggcggUCGCCGg -3'
miRNA:   3'- caAGUGGCuuCU-CGCGUaaa--AGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 36912 0.66 0.928376
Target:  5'- ---gACCGGGuGAGCGgGUcaUCGCCa -3'
miRNA:   3'- caagUGGCUU-CUCGCgUAaaAGCGGc -5'
26257 5' -50.3 NC_005345.2 + 35884 0.71 0.689088
Target:  5'- -gUCGCCGAcGAGCuGC----UCGCCGg -3'
miRNA:   3'- caAGUGGCUuCUCG-CGuaaaAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 35870 0.7 0.699295
Target:  5'- --gCACCGgcGAGCugccgguGCAgcggUUCGCCGa -3'
miRNA:   3'- caaGUGGCuuCUCG-------CGUaa--AAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 33452 0.66 0.922314
Target:  5'- aUUCGCCGAGGAccugcaGCGgCAga-UCgGCCGg -3'
miRNA:   3'- cAAGUGGCUUCU------CGC-GUaaaAG-CGGC- -5'
26257 5' -50.3 NC_005345.2 + 32521 0.66 0.91595
Target:  5'- --gCACCGGAGugacggcGUGCAUgccgaCGCCGa -3'
miRNA:   3'- caaGUGGCUUCu------CGCGUAaaa--GCGGC- -5'
26257 5' -50.3 NC_005345.2 + 31455 0.68 0.827086
Target:  5'- -gUCGCCGAGGccGGCGCgg-UUCGUaCGg -3'
miRNA:   3'- caAGUGGCUUC--UCGCGuaaAAGCG-GC- -5'
26257 5' -50.3 NC_005345.2 + 31235 0.74 0.507358
Target:  5'- -aUCACCGAGGAgucgaaccguguGCGCGg---CGCCGu -3'
miRNA:   3'- caAGUGGCUUCU------------CGCGUaaaaGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 30708 0.69 0.797629
Target:  5'- --cCACCac-GGGCGCAggUUCGCCc -3'
miRNA:   3'- caaGUGGcuuCUCGCGUaaAAGCGGc -5'
26257 5' -50.3 NC_005345.2 + 30640 0.7 0.700426
Target:  5'- --gCGCCGAGgacgccGAGCGCAgcgccUUUGCCGa -3'
miRNA:   3'- caaGUGGCUU------CUCGCGUaa---AAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.