miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26257 5' -50.3 NC_005345.2 + 44605 0.77 0.331691
Target:  5'- -gUCAUCGAGGAGCGgCGgcagCGCCGg -3'
miRNA:   3'- caAGUGGCUUCUCGC-GUaaaaGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 18930 0.66 0.909284
Target:  5'- -cUCACCGccGGAuGCGCGaucgUCGCCc -3'
miRNA:   3'- caAGUGGCu-UCU-CGCGUaaa-AGCGGc -5'
26257 5' -50.3 NC_005345.2 + 13635 0.66 0.922314
Target:  5'- ---aACCGGAcGGCGCGgcgugagCGCCGa -3'
miRNA:   3'- caagUGGCUUcUCGCGUaaaa---GCGGC- -5'
26257 5' -50.3 NC_005345.2 + 36912 0.66 0.928376
Target:  5'- ---gACCGGGuGAGCGgGUcaUCGCCa -3'
miRNA:   3'- caagUGGCUU-CUCGCgUAaaAGCGGc -5'
26257 5' -50.3 NC_005345.2 + 17300 0.7 0.711691
Target:  5'- cGUUCGCCGcAGGuGCGCcgcaccCGCCGc -3'
miRNA:   3'- -CAAGUGGC-UUCuCGCGuaaaa-GCGGC- -5'
26257 5' -50.3 NC_005345.2 + 23614 0.7 0.732849
Target:  5'- --aCGCCGgcGGaccgggcacggcuGCGCAUggugUUCGCCGa -3'
miRNA:   3'- caaGUGGCuuCU-------------CGCGUAa---AAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 10252 0.69 0.787415
Target:  5'- --aCACCGggGcAGCGUucGUUcaCGCCGc -3'
miRNA:   3'- caaGUGGCuuC-UCGCG--UAAaaGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 12538 0.68 0.827086
Target:  5'- -cUCGCgGAGcGGGCGCAg---CGCUGg -3'
miRNA:   3'- caAGUGgCUU-CUCGCGUaaaaGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 5867 0.68 0.845621
Target:  5'- -cUCGCCGAGGA-CGUcg--UCGCCa -3'
miRNA:   3'- caAGUGGCUUCUcGCGuaaaAGCGGc -5'
26257 5' -50.3 NC_005345.2 + 24024 0.66 0.895061
Target:  5'- -cUCGCCGAGGcguGUGCcgauGUggUUGCCGa -3'
miRNA:   3'- caAGUGGCUUCu--CGCG----UAaaAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 9775 0.67 0.871561
Target:  5'- --cCGCCGAGGcguagcugcgacAGCGUg--UUCGCCGc -3'
miRNA:   3'- caaGUGGCUUC------------UCGCGuaaAAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 18539 0.68 0.836471
Target:  5'- --gCACCGGugggcugcucGGGGCGC----UCGCCGg -3'
miRNA:   3'- caaGUGGCU----------UCUCGCGuaaaAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 31235 0.74 0.507358
Target:  5'- -aUCACCGAGGAgucgaaccguguGCGCGg---CGCCGu -3'
miRNA:   3'- caAGUGGCUUCU------------CGCGUaaaaGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 44156 0.67 0.879675
Target:  5'- -gUCACCauGgcGAGCGCGU--UCGuCCGc -3'
miRNA:   3'- caAGUGG--CuuCUCGCGUAaaAGC-GGC- -5'
26257 5' -50.3 NC_005345.2 + 18673 0.73 0.551752
Target:  5'- -cUCACCGAAGAGgGUgccgUCGUCGu -3'
miRNA:   3'- caAGUGGCUUCUCgCGuaaaAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 31455 0.68 0.827086
Target:  5'- -gUCGCCGAGGccGGCGCgg-UUCGUaCGg -3'
miRNA:   3'- caAGUGGCUUC--UCGCGuaaAAGCG-GC- -5'
26257 5' -50.3 NC_005345.2 + 17739 0.67 0.887511
Target:  5'- -aUCGCCG-GGuGCGCAc--UCGCCc -3'
miRNA:   3'- caAGUGGCuUCuCGCGUaaaAGCGGc -5'
26257 5' -50.3 NC_005345.2 + 46305 0.66 0.909284
Target:  5'- cUUCGCCGcccGAGCGCA----CGCUGu -3'
miRNA:   3'- cAAGUGGCuu-CUCGCGUaaaaGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 35870 0.7 0.699295
Target:  5'- --gCACCGgcGAGCugccgguGCAgcggUUCGCCGa -3'
miRNA:   3'- caaGUGGCuuCUCG-------CGUaa--AAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 19991 0.69 0.755765
Target:  5'- gGUUCGCCGAGG-GCGaCAggcgggcUGCCGg -3'
miRNA:   3'- -CAAGUGGCUUCuCGC-GUaaaa---GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.