miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26257 5' -50.3 NC_005345.2 + 36912 0.66 0.928376
Target:  5'- ---gACCGGGuGAGCGgGUcaUCGCCa -3'
miRNA:   3'- caagUGGCUU-CUCGCgUAaaAGCGGc -5'
26257 5' -50.3 NC_005345.2 + 44156 0.67 0.879675
Target:  5'- -gUCACCauGgcGAGCGCGU--UCGuCCGc -3'
miRNA:   3'- caAGUGG--CuuCUCGCGUAaaAGC-GGC- -5'
26257 5' -50.3 NC_005345.2 + 18930 0.66 0.909284
Target:  5'- -cUCACCGccGGAuGCGCGaucgUCGCCc -3'
miRNA:   3'- caAGUGGCu-UCU-CGCGUaaa-AGCGGc -5'
26257 5' -50.3 NC_005345.2 + 10049 0.66 0.922314
Target:  5'- -cUCGCCGAGGAcGCGaucggGUUcgaCGCCGu -3'
miRNA:   3'- caAGUGGCUUCU-CGCg----UAAaa-GCGGC- -5'
26257 5' -50.3 NC_005345.2 + 5867 0.68 0.845621
Target:  5'- -cUCGCCGAGGA-CGUcg--UCGCCa -3'
miRNA:   3'- caAGUGGCUUCUcGCGuaaaAGCGGc -5'
26257 5' -50.3 NC_005345.2 + 7458 0.72 0.631748
Target:  5'- ---uGCCGAAGcuCGCGUagUCGCCGg -3'
miRNA:   3'- caagUGGCUUCucGCGUAaaAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 30708 0.69 0.797629
Target:  5'- --cCACCac-GGGCGCAggUUCGCCc -3'
miRNA:   3'- caaGUGGcuuCUCGCGUaaAAGCGGc -5'
26257 5' -50.3 NC_005345.2 + 25136 0.66 0.922314
Target:  5'- --aCGCCucGgcGAGCGCGaucgCGCCGa -3'
miRNA:   3'- caaGUGG--CuuCUCGCGUaaaaGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 26698 0.68 0.827086
Target:  5'- -gUCcCCGAGGcGGCGUGgcaugUCGCCGa -3'
miRNA:   3'- caAGuGGCUUC-UCGCGUaaa--AGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 45273 0.68 0.845621
Target:  5'- -gUCGgCGGAGAgcaGCGCAgggaCGCCGa -3'
miRNA:   3'- caAGUgGCUUCU---CGCGUaaaaGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 19441 0.67 0.887511
Target:  5'- --gCACCGGgcucgggcAGcAGCGCGaucgcgUUCGCCGg -3'
miRNA:   3'- caaGUGGCU--------UC-UCGCGUaa----AAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 10007 0.66 0.908601
Target:  5'- --gCGCCGguGAGCGggagcgacucccaCAggUUCGCCGu -3'
miRNA:   3'- caaGUGGCuuCUCGC-------------GUaaAAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 35884 0.71 0.689088
Target:  5'- -gUCGCCGAcGAGCuGC----UCGCCGg -3'
miRNA:   3'- caAGUGGCUuCUCG-CGuaaaAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 21016 0.71 0.684535
Target:  5'- cGUUCGCCGGcccGGGUGCGUUccucggcacgcgCGCCGg -3'
miRNA:   3'- -CAAGUGGCUu--CUCGCGUAAaa----------GCGGC- -5'
26257 5' -50.3 NC_005345.2 + 13030 0.71 0.67769
Target:  5'- --cCGCCGAAGAGCGac--UUgGCCGc -3'
miRNA:   3'- caaGUGGCUUCUCGCguaaAAgCGGC- -5'
26257 5' -50.3 NC_005345.2 + 9053 0.66 0.909284
Target:  5'- --aCACCGAGcaGGCGCGg---CGCCa -3'
miRNA:   3'- caaGUGGCUUc-UCGCGUaaaaGCGGc -5'
26257 5' -50.3 NC_005345.2 + 47077 1.09 0.002862
Target:  5'- aGUUCACCGAAGAGCGCAUUUUCGCCGc -3'
miRNA:   3'- -CAAGUGGCUUCUCGCGUAAAAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 12644 0.71 0.654765
Target:  5'- aGUUCGCCG--GGGCGCGgucggcCGCCGu -3'
miRNA:   3'- -CAAGUGGCuuCUCGCGUaaaa--GCGGC- -5'
26257 5' -50.3 NC_005345.2 + 19347 0.73 0.563045
Target:  5'- -cUCGCCGggGgcgAGCGCGUagUCGUCu -3'
miRNA:   3'- caAGUGGCuuC---UCGCGUAaaAGCGGc -5'
26257 5' -50.3 NC_005345.2 + 28604 0.72 0.608732
Target:  5'- --aCACCGAAucGCGCAUgccgggcgugUCGCCGc -3'
miRNA:   3'- caaGUGGCUUcuCGCGUAaa--------AGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.