miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26257 5' -50.3 NC_005345.2 + 18673 0.73 0.551752
Target:  5'- -cUCACCGAAGAGgGUgccgUCGUCGu -3'
miRNA:   3'- caAGUGGCUUCUCgCGuaaaAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 18930 0.66 0.909284
Target:  5'- -cUCACCGccGGAuGCGCGaucgUCGCCc -3'
miRNA:   3'- caAGUGGCu-UCU-CGCGUaaa-AGCGGc -5'
26257 5' -50.3 NC_005345.2 + 19347 0.73 0.563045
Target:  5'- -cUCGCCGggGgcgAGCGCGUagUCGUCu -3'
miRNA:   3'- caAGUGGCuuC---UCGCGUAaaAGCGGc -5'
26257 5' -50.3 NC_005345.2 + 19441 0.67 0.887511
Target:  5'- --gCACCGGgcucgggcAGcAGCGCGaucgcgUUCGCCGg -3'
miRNA:   3'- caaGUGGCU--------UC-UCGCGUaa----AAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 19991 0.69 0.755765
Target:  5'- gGUUCGCCGAGG-GCGaCAggcgggcUGCCGg -3'
miRNA:   3'- -CAAGUGGCUUCuCGC-GUaaaa---GCGGC- -5'
26257 5' -50.3 NC_005345.2 + 21016 0.71 0.684535
Target:  5'- cGUUCGCCGGcccGGGUGCGUUccucggcacgcgCGCCGg -3'
miRNA:   3'- -CAAGUGGCUu--CUCGCGUAAaa----------GCGGC- -5'
26257 5' -50.3 NC_005345.2 + 22586 0.66 0.928376
Target:  5'- -cUCACUGAAcGAcgcgaugugcucGCGCAccUUCGCCa -3'
miRNA:   3'- caAGUGGCUU-CU------------CGCGUaaAAGCGGc -5'
26257 5' -50.3 NC_005345.2 + 23051 0.69 0.777025
Target:  5'- --cCGCCGAGGucGUGCAca-UCGCCGc -3'
miRNA:   3'- caaGUGGCUUCu-CGCGUaaaAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 23614 0.7 0.732849
Target:  5'- --aCGCCGgcGGaccgggcacggcuGCGCAUggugUUCGCCGa -3'
miRNA:   3'- caaGUGGCuuCU-------------CGCGUAa---AAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 24024 0.66 0.895061
Target:  5'- -cUCGCCGAGGcguGUGCcgauGUggUUGCCGa -3'
miRNA:   3'- caAGUGGCUUCu--CGCG----UAaaAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 25136 0.66 0.922314
Target:  5'- --aCGCCucGgcGAGCGCGaucgCGCCGa -3'
miRNA:   3'- caaGUGG--CuuCUCGCGUaaaaGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 26020 0.66 0.928376
Target:  5'- --gUACCGGacgcgGGAGCGCAccggcgcUCGCCu -3'
miRNA:   3'- caaGUGGCU-----UCUCGCGUaaa----AGCGGc -5'
26257 5' -50.3 NC_005345.2 + 26698 0.68 0.827086
Target:  5'- -gUCcCCGAGGcGGCGUGgcaugUCGCCGa -3'
miRNA:   3'- caAGuGGCUUC-UCGCGUaaa--AGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 28542 0.69 0.787415
Target:  5'- -gUCGCCGAGacuugcGAGCGCc----CGCCGg -3'
miRNA:   3'- caAGUGGCUU------CUCGCGuaaaaGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 28604 0.72 0.608732
Target:  5'- --aCACCGAAucGCGCAUgccgggcgugUCGCCGc -3'
miRNA:   3'- caaGUGGCUUcuCGCGUAaa--------AGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 30640 0.7 0.700426
Target:  5'- --gCGCCGAGgacgccGAGCGCAgcgccUUUGCCGa -3'
miRNA:   3'- caaGUGGCUU------CUCGCGUaa---AAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 30708 0.69 0.797629
Target:  5'- --cCACCac-GGGCGCAggUUCGCCc -3'
miRNA:   3'- caaGUGGcuuCUCGCGUaaAAGCGGc -5'
26257 5' -50.3 NC_005345.2 + 31235 0.74 0.507358
Target:  5'- -aUCACCGAGGAgucgaaccguguGCGCGg---CGCCGu -3'
miRNA:   3'- caAGUGGCUUCU------------CGCGUaaaaGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 31455 0.68 0.827086
Target:  5'- -gUCGCCGAGGccGGCGCgg-UUCGUaCGg -3'
miRNA:   3'- caAGUGGCUUC--UCGCGuaaAAGCG-GC- -5'
26257 5' -50.3 NC_005345.2 + 32521 0.66 0.91595
Target:  5'- --gCACCGGAGugacggcGUGCAUgccgaCGCCGa -3'
miRNA:   3'- caaGUGGCUUCu------CGCGUAaaa--GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.