miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26257 5' -50.3 NC_005345.2 + 19441 0.67 0.887511
Target:  5'- --gCACCGGgcucgggcAGcAGCGCGaucgcgUUCGCCGg -3'
miRNA:   3'- caaGUGGCU--------UC-UCGCGUaa----AAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 17739 0.67 0.887511
Target:  5'- -aUCGCCG-GGuGCGCAc--UCGCCc -3'
miRNA:   3'- caAGUGGCuUCuCGCGUaaaAGCGGc -5'
26257 5' -50.3 NC_005345.2 + 44156 0.67 0.879675
Target:  5'- -gUCACCauGgcGAGCGCGU--UCGuCCGc -3'
miRNA:   3'- caAGUGG--CuuCUCGCGUAaaAGC-GGC- -5'
26257 5' -50.3 NC_005345.2 + 9775 0.67 0.871561
Target:  5'- --cCGCCGAGGcguagcugcgacAGCGUg--UUCGCCGc -3'
miRNA:   3'- caaGUGGCUUC------------UCGCGuaaAAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 18619 0.67 0.871561
Target:  5'- -gUCACCGGcacgcAGAGCGgCAgcacccUCGCCc -3'
miRNA:   3'- caAGUGGCU-----UCUCGC-GUaaa---AGCGGc -5'
26257 5' -50.3 NC_005345.2 + 45273 0.68 0.845621
Target:  5'- -gUCGgCGGAGAgcaGCGCAgggaCGCCGa -3'
miRNA:   3'- caAGUgGCUUCU---CGCGUaaaaGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 5867 0.68 0.845621
Target:  5'- -cUCGCCGAGGA-CGUcg--UCGCCa -3'
miRNA:   3'- caAGUGGCUUCUcGCGuaaaAGCGGc -5'
26257 5' -50.3 NC_005345.2 + 18539 0.68 0.836471
Target:  5'- --gCACCGGugggcugcucGGGGCGC----UCGCCGg -3'
miRNA:   3'- caaGUGGCU----------UCUCGCGuaaaAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 12538 0.68 0.827086
Target:  5'- -cUCGCgGAGcGGGCGCAg---CGCUGg -3'
miRNA:   3'- caAGUGgCUU-CUCGCGUaaaaGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 31455 0.68 0.827086
Target:  5'- -gUCGCCGAGGccGGCGCgg-UUCGUaCGg -3'
miRNA:   3'- caAGUGGCUUC--UCGCGuaaAAGCG-GC- -5'
26257 5' -50.3 NC_005345.2 + 26698 0.68 0.827086
Target:  5'- -gUCcCCGAGGcGGCGUGgcaugUCGCCGa -3'
miRNA:   3'- caAGuGGCUUC-UCGCGUaaa--AGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 10596 0.69 0.797629
Target:  5'- ---uGCCGguGGGCGCGUa--CGCCGa -3'
miRNA:   3'- caagUGGCuuCUCGCGUAaaaGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 30708 0.69 0.797629
Target:  5'- --cCACCac-GGGCGCAggUUCGCCc -3'
miRNA:   3'- caaGUGGcuuCUCGCGUaaAAGCGGc -5'
26257 5' -50.3 NC_005345.2 + 28542 0.69 0.787415
Target:  5'- -gUCGCCGAGacuugcGAGCGCc----CGCCGg -3'
miRNA:   3'- caAGUGGCUU------CUCGCGuaaaaGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 10252 0.69 0.787415
Target:  5'- --aCACCGggGcAGCGUucGUUcaCGCCGc -3'
miRNA:   3'- caaGUGGCuuC-UCGCG--UAAaaGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 10122 0.69 0.787415
Target:  5'- gGUUC-CCGGAGAcGCGCAgca--GCCa -3'
miRNA:   3'- -CAAGuGGCUUCU-CGCGUaaaagCGGc -5'
26257 5' -50.3 NC_005345.2 + 23051 0.69 0.777025
Target:  5'- --cCGCCGAGGucGUGCAca-UCGCCGc -3'
miRNA:   3'- caaGUGGCUUCu-CGCGUaaaAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 19991 0.69 0.755765
Target:  5'- gGUUCGCCGAGG-GCGaCAggcgggcUGCCGg -3'
miRNA:   3'- -CAAGUGGCUUCuCGC-GUaaaa---GCGGC- -5'
26257 5' -50.3 NC_005345.2 + 23614 0.7 0.732849
Target:  5'- --aCGCCGgcGGaccgggcacggcuGCGCAUggugUUCGCCGa -3'
miRNA:   3'- caaGUGGCuuCU-------------CGCGUAa---AAGCGGC- -5'
26257 5' -50.3 NC_005345.2 + 17300 0.7 0.711691
Target:  5'- cGUUCGCCGcAGGuGCGCcgcaccCGCCGc -3'
miRNA:   3'- -CAAGUGGC-UUCuCGCGuaaaa-GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.