Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26260 | 3' | -54.5 | NC_005345.2 | + | 45629 | 1.1 | 0.000835 |
Target: 5'- cACCGCCGAACGCAGUUCGCUCAUGACg -3' miRNA: 3'- -UGGCGGCUUGCGUCAAGCGAGUACUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 18638 | 0.74 | 0.294238 |
Target: 5'- cGCUGCCGGuaccCGCccgGGUUCGC-CAUGACc -3' miRNA: 3'- -UGGCGGCUu---GCG---UCAAGCGaGUACUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 20222 | 0.73 | 0.317392 |
Target: 5'- cCCGCCGcAGCGCA--UCGCcugCGUGGCa -3' miRNA: 3'- uGGCGGC-UUGCGUcaAGCGa--GUACUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 3892 | 0.72 | 0.37663 |
Target: 5'- uCCGCCGAcgcuCGCAGUgugggggugCGC-CGUGGCu -3' miRNA: 3'- uGGCGGCUu---GCGUCAa--------GCGaGUACUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 29296 | 0.72 | 0.367725 |
Target: 5'- gUCGCCcGAgGCAGcgCGCUCGUGAa -3' miRNA: 3'- uGGCGGcUUgCGUCaaGCGAGUACUg -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 40770 | 0.72 | 0.37663 |
Target: 5'- gGCCGCCGGcCGCGGUUCcacacCUCGccGACa -3' miRNA: 3'- -UGGCGGCUuGCGUCAAGc----GAGUa-CUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 47536 | 0.71 | 0.423277 |
Target: 5'- gACCGaccucaucaCCGAACGCgaccgcaaGGaaCGCUCGUGACg -3' miRNA: 3'- -UGGC---------GGCUUGCG--------UCaaGCGAGUACUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 43102 | 0.71 | 0.413672 |
Target: 5'- cCCGCCGuAGCGCGGUgaGCUgcaGUGGCu -3' miRNA: 3'- uGGCGGC-UUGCGUCAagCGAg--UACUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 32815 | 0.71 | 0.433015 |
Target: 5'- uGCCGCCGAcgagcuuucgcuGCGCGGgagugaGCUCggGAUg -3' miRNA: 3'- -UGGCGGCU------------UGCGUCaag---CGAGuaCUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 47781 | 0.71 | 0.431057 |
Target: 5'- aACCGCCG-ACGCGacugcaccgGCUCGUGGCa -3' miRNA: 3'- -UGGCGGCuUGCGUcaag-----CGAGUACUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 41321 | 0.7 | 0.47322 |
Target: 5'- aGCUGCCGAGCGCccugcGUcUCGCUCAc--- -3' miRNA: 3'- -UGGCGGCUUGCGu----CA-AGCGAGUacug -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 37501 | 0.7 | 0.495066 |
Target: 5'- cCCGCCGGGCGCGGgcugcggcgcggugCGCUCGc--- -3' miRNA: 3'- uGGCGGCUUGCGUCaa------------GCGAGUacug -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 12982 | 0.7 | 0.483564 |
Target: 5'- gACCaGCUGAacACGCAGUUCGCgcugCcggccgcacgGUGGCg -3' miRNA: 3'- -UGG-CGGCU--UGCGUCAAGCGa---G----------UACUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 46389 | 0.7 | 0.47322 |
Target: 5'- gGCCGCCGcGCGUGGcgCGCUCcacaugcgGGCc -3' miRNA: 3'- -UGGCGGCuUGCGUCaaGCGAGua------CUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 40826 | 0.69 | 0.547678 |
Target: 5'- cGCCGCCgGAACGCuGcugcugCGCgccgcCAUGGCg -3' miRNA: 3'- -UGGCGG-CUUGCGuCaa----GCGa----GUACUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 5604 | 0.69 | 0.504568 |
Target: 5'- uGCCGUgGGGCGCcGg--GCUCGUGGCc -3' miRNA: 3'- -UGGCGgCUUGCGuCaagCGAGUACUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 20101 | 0.69 | 0.53678 |
Target: 5'- cGCCGCCGccACGCAGaaacUCGaaCGUGAUg -3' miRNA: 3'- -UGGCGGCu-UGCGUCa---AGCgaGUACUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 5237 | 0.68 | 0.580756 |
Target: 5'- gAUCGCCGAcGCGCuGcgCGCcgcCGUGGCg -3' miRNA: 3'- -UGGCGGCU-UGCGuCaaGCGa--GUACUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 15293 | 0.68 | 0.558646 |
Target: 5'- -aCGCCGAACGCcucggcgaGGUUCGUcgccgacuuggUCAgUGACg -3' miRNA: 3'- ugGCGGCUUGCG--------UCAAGCG-----------AGU-ACUG- -5' |
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26260 | 3' | -54.5 | NC_005345.2 | + | 42906 | 0.68 | 0.580756 |
Target: 5'- aACCGCCG---GUAG-UCGCUCggGGCg -3' miRNA: 3'- -UGGCGGCuugCGUCaAGCGAGuaCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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