miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26263 3' -59.5 NC_005345.2 + 28759 0.66 0.519643
Target:  5'- cGGCggGGCCgGCUCGGUG-ACgGUCaugagGCGc -3'
miRNA:   3'- -CCG--CCGGgCGAGCUACaUG-CAGg----CGC- -5'
26263 3' -59.5 NC_005345.2 + 22288 0.66 0.518625
Target:  5'- aGGCGGCCgGggCGAcGUGgGUCgagguguCGCGg -3'
miRNA:   3'- -CCGCCGGgCgaGCUaCAUgCAG-------GCGC- -5'
26263 3' -59.5 NC_005345.2 + 32523 0.66 0.509494
Target:  5'- gGGCGGCCCGaucugCGcgGgucCGggCCGCc -3'
miRNA:   3'- -CCGCCGGGCga---GCuaCau-GCa-GGCGc -5'
26263 3' -59.5 NC_005345.2 + 40757 0.66 0.509494
Target:  5'- gGGCGGaCCGUUCGGccgcCGgCCGCGg -3'
miRNA:   3'- -CCGCCgGGCGAGCUacauGCaGGCGC- -5'
26263 3' -59.5 NC_005345.2 + 21183 0.66 0.503444
Target:  5'- cGCGGCCUcggccuuguggucggGCUugucgucgucgcCGGUGU-CGUCCGUGu -3'
miRNA:   3'- cCGCCGGG---------------CGA------------GCUACAuGCAGGCGC- -5'
26263 3' -59.5 NC_005345.2 + 12260 0.66 0.499428
Target:  5'- aGGCccGGCUCGUUCGGaccGUACGccgaccuggUCCGCu -3'
miRNA:   3'- -CCG--CCGGGCGAGCUa--CAUGC---------AGGCGc -5'
26263 3' -59.5 NC_005345.2 + 16029 0.66 0.499428
Target:  5'- gGGUGaGaCCCGCggCGA-GUACGcgCUGCGg -3'
miRNA:   3'- -CCGC-C-GGGCGa-GCUaCAUGCa-GGCGC- -5'
26263 3' -59.5 NC_005345.2 + 32959 0.66 0.499428
Target:  5'- aGGCGGa-CGC-CGGcc-GCGUCCGCGu -3'
miRNA:   3'- -CCGCCggGCGaGCUacaUGCAGGCGC- -5'
26263 3' -59.5 NC_005345.2 + 41051 0.66 0.489452
Target:  5'- uGCGGCCgcacUGCUCGccgaacagcUGU-CGUCCGCu -3'
miRNA:   3'- cCGCCGG----GCGAGCu--------ACAuGCAGGCGc -5'
26263 3' -59.5 NC_005345.2 + 3980 0.66 0.483511
Target:  5'- cGGCugcgacgucaGGCCCGgUCGGacgagccgcagcGCGUCCGCGu -3'
miRNA:   3'- -CCG----------CCGGGCgAGCUaca---------UGCAGGCGC- -5'
26263 3' -59.5 NC_005345.2 + 24983 0.66 0.47957
Target:  5'- uGGCaaguGCCCGUcgUCGAgGUGCucgCCGCGg -3'
miRNA:   3'- -CCGc---CGGGCG--AGCUaCAUGca-GGCGC- -5'
26263 3' -59.5 NC_005345.2 + 26058 0.66 0.47957
Target:  5'- cGGCGagcGCCUGCUCGAacUGgcucgUGUCUGCc -3'
miRNA:   3'- -CCGC---CGGGCGAGCU--ACau---GCAGGCGc -5'
26263 3' -59.5 NC_005345.2 + 47102 0.66 0.469786
Target:  5'- cGCGGCCCGC-CGGgccGCG-CCGgGc -3'
miRNA:   3'- cCGCCGGGCGaGCUacaUGCaGGCgC- -5'
26263 3' -59.5 NC_005345.2 + 46483 0.66 0.469786
Target:  5'- cGCGGCCuCGC-CGAUcaaGU-CGgCCGCGa -3'
miRNA:   3'- cCGCCGG-GCGaGCUA---CAuGCaGGCGC- -5'
26263 3' -59.5 NC_005345.2 + 44997 0.66 0.469786
Target:  5'- cGCGucgacaCCCGCUCGAcGaGCG-CCGCGa -3'
miRNA:   3'- cCGCc-----GGGCGAGCUaCaUGCaGGCGC- -5'
26263 3' -59.5 NC_005345.2 + 1648 0.66 0.469786
Target:  5'- cGCGGUaCCGagugUGGUucGUACGUCCGCu -3'
miRNA:   3'- cCGCCG-GGCga--GCUA--CAUGCAGGCGc -5'
26263 3' -59.5 NC_005345.2 + 24056 0.66 0.469786
Target:  5'- cGCGGCCCGaaCGccGcuucccaGUCCGCGa -3'
miRNA:   3'- cCGCCGGGCgaGCuaCaug----CAGGCGC- -5'
26263 3' -59.5 NC_005345.2 + 39432 0.66 0.469786
Target:  5'- cGCGGCCCGCgcggCGcgGcucACG-CgGCGg -3'
miRNA:   3'- cCGCCGGGCGa---GCuaCa--UGCaGgCGC- -5'
26263 3' -59.5 NC_005345.2 + 24272 0.66 0.469786
Target:  5'- aGGCGGCagCCGaucagCGcgGUcGCGUCCGUc -3'
miRNA:   3'- -CCGCCG--GGCga---GCuaCA-UGCAGGCGc -5'
26263 3' -59.5 NC_005345.2 + 11211 0.67 0.460106
Target:  5'- --gGGCaCCGUcggcgUCGAg--GCGUCCGCGa -3'
miRNA:   3'- ccgCCG-GGCG-----AGCUacaUGCAGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.