miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26264 3' -54.4 NC_005345.2 + 25804 0.66 0.757074
Target:  5'- uGGCAcagucGGc-CGGGUACAuGCUCGUcGGCg -3'
miRNA:   3'- -CCGU-----CCuaGCUCAUGU-CGAGCGcUCG- -5'
26264 3' -54.4 NC_005345.2 + 12469 0.66 0.757074
Target:  5'- nGGCAGG--CGAGgcgcgACgaucucgcggAGCUCGcCGAGUg -3'
miRNA:   3'- -CCGUCCuaGCUCa----UG----------UCGAGC-GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 5207 0.66 0.757074
Target:  5'- cGGCAcGGcCGG--GCAGCUCGCG-GCc -3'
miRNA:   3'- -CCGUcCUaGCUcaUGUCGAGCGCuCG- -5'
26264 3' -54.4 NC_005345.2 + 18154 0.66 0.757074
Target:  5'- cGGC---GUCGGGUACAGCcucggcucggUGUGGGCg -3'
miRNA:   3'- -CCGuccUAGCUCAUGUCGa---------GCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 31685 0.66 0.757074
Target:  5'- cGGCgaacuuGGGGUCgGAGUGCGGacggucCUCGgGuGCg -3'
miRNA:   3'- -CCG------UCCUAG-CUCAUGUC------GAGCgCuCG- -5'
26264 3' -54.4 NC_005345.2 + 27770 0.66 0.757074
Target:  5'- uGCAGGAcgaaCGGGcGCAGCUCG-GuGUa -3'
miRNA:   3'- cCGUCCUa---GCUCaUGUCGAGCgCuCG- -5'
26264 3' -54.4 NC_005345.2 + 25433 0.66 0.757074
Target:  5'- cGcCAGGAagCGAGcGCAgagccccguaccGCUCGCGuGCg -3'
miRNA:   3'- cC-GUCCUa-GCUCaUGU------------CGAGCGCuCG- -5'
26264 3' -54.4 NC_005345.2 + 43636 0.66 0.746626
Target:  5'- cGGCGGGGUCGcGGUAgUAGCgaccccgcucggUUGCGAccGCc -3'
miRNA:   3'- -CCGUCCUAGC-UCAU-GUCG------------AGCGCU--CG- -5'
26264 3' -54.4 NC_005345.2 + 48562 0.66 0.746626
Target:  5'- gGGCGucgcGGAUgCGGGcGCcgaugAGCUCGCG-GCg -3'
miRNA:   3'- -CCGU----CCUA-GCUCaUG-----UCGAGCGCuCG- -5'
26264 3' -54.4 NC_005345.2 + 35864 0.66 0.736061
Target:  5'- gGGCgGGGGUCGGGgGCGucgucGC-CGaCGAGCu -3'
miRNA:   3'- -CCG-UCCUAGCUCaUGU-----CGaGC-GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 16372 0.66 0.736061
Target:  5'- cGCGGugaucgcgacGAUCGGGUucguCGGCUCGUacaccgcuguGAGCa -3'
miRNA:   3'- cCGUC----------CUAGCUCAu---GUCGAGCG----------CUCG- -5'
26264 3' -54.4 NC_005345.2 + 33241 0.66 0.736061
Target:  5'- cGGCgaaGGcGAUCGucacggGGUACAGCUCGgugccCGGGUc -3'
miRNA:   3'- -CCG---UC-CUAGC------UCAUGUCGAGC-----GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 1111 0.66 0.725388
Target:  5'- cGCcGGA-CGAGcACAGC-CGCGuAGCc -3'
miRNA:   3'- cCGuCCUaGCUCaUGUCGaGCGC-UCG- -5'
26264 3' -54.4 NC_005345.2 + 27312 0.66 0.725388
Target:  5'- uGGUGGGGUCGAGU--GGCUgagagGCGAucuGCg -3'
miRNA:   3'- -CCGUCCUAGCUCAugUCGAg----CGCU---CG- -5'
26264 3' -54.4 NC_005345.2 + 4256 0.66 0.725388
Target:  5'- aGCGGGA-CGAGgccacguugcUGCGcCUCGCGAcGCg -3'
miRNA:   3'- cCGUCCUaGCUC----------AUGUcGAGCGCU-CG- -5'
26264 3' -54.4 NC_005345.2 + 26957 0.66 0.725388
Target:  5'- cGGCu-GAUCGGGUucguccucGCGGCguUCGaCGGGCu -3'
miRNA:   3'- -CCGucCUAGCUCA--------UGUCG--AGC-GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 29067 0.66 0.718939
Target:  5'- cGGCGGGcucgccgagaccgCGAGcUACcGCUCGUGGGa -3'
miRNA:   3'- -CCGUCCua-----------GCUC-AUGuCGAGCGCUCg -5'
26264 3' -54.4 NC_005345.2 + 36346 0.66 0.714621
Target:  5'- cGGCGGGc-CGA--GCGGCUCggGCGGGUc -3'
miRNA:   3'- -CCGUCCuaGCUcaUGUCGAG--CGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 26158 0.66 0.714621
Target:  5'- cGGCgAGGAcccCGAGcccgAGUUCGCGGGUg -3'
miRNA:   3'- -CCG-UCCUa--GCUCaug-UCGAGCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 9869 0.66 0.714621
Target:  5'- aGCAGGGgcugcUCGAcGaGCAGCa-GCGGGCc -3'
miRNA:   3'- cCGUCCU-----AGCU-CaUGUCGagCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.