miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26264 3' -54.4 NC_005345.2 + 14816 0.79 0.142001
Target:  5'- cGGCGGGcgCGGGUguggucgacgcccgaGCAGCUUGcCGGGCu -3'
miRNA:   3'- -CCGUCCuaGCUCA---------------UGUCGAGC-GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 9489 0.69 0.549335
Target:  5'- cGGCuGaGAcCGAGUgGCAG-UCGCGGGCc -3'
miRNA:   3'- -CCGuC-CUaGCUCA-UGUCgAGCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 14606 0.69 0.571161
Target:  5'- cGGCuccGGAUCGAcggGUAC-GCcCGCGAGg -3'
miRNA:   3'- -CCGu--CCUAGCU---CAUGuCGaGCGCUCg -5'
26264 3' -54.4 NC_005345.2 + 18154 0.66 0.757074
Target:  5'- cGGC---GUCGGGUACAGCcucggcucggUGUGGGCg -3'
miRNA:   3'- -CCGuccUAGCUCAUGUCGa---------GCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 45674 0.75 0.275312
Target:  5'- cGCGGGuaacGUCGAGgcauguccgACAGCccgCGCGAGCu -3'
miRNA:   3'- cCGUCC----UAGCUCa--------UGUCGa--GCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 24815 0.73 0.3617
Target:  5'- gGGCGaccGGAucgugcUCGGGUucgACGGCUCGCGcaAGCg -3'
miRNA:   3'- -CCGU---CCU------AGCUCA---UGUCGAGCGC--UCG- -5'
26264 3' -54.4 NC_005345.2 + 12512 0.72 0.397467
Target:  5'- cGCAGuacgCGGGUgaucucgcGCAGCUCGCgGAGCg -3'
miRNA:   3'- cCGUCcua-GCUCA--------UGUCGAGCG-CUCG- -5'
26264 3' -54.4 NC_005345.2 + 32349 0.72 0.397467
Target:  5'- gGGCGaGGUCGAGU-CGGUUgGCGAGg -3'
miRNA:   3'- -CCGUcCUAGCUCAuGUCGAgCGCUCg -5'
26264 3' -54.4 NC_005345.2 + 11666 0.71 0.435426
Target:  5'- cGGCGGGAaCGucGUACcGCUCGCccGCg -3'
miRNA:   3'- -CCGUCCUaGCu-CAUGuCGAGCGcuCG- -5'
26264 3' -54.4 NC_005345.2 + 39596 0.69 0.538519
Target:  5'- cGCGGGGacuaCGAGggGCAGCUCgGCGuGUg -3'
miRNA:   3'- cCGUCCUa---GCUCa-UGUCGAG-CGCuCG- -5'
26264 3' -54.4 NC_005345.2 + 12299 0.7 0.485675
Target:  5'- -uCGGGAUCGAGUGCcccgAGUgCGCG-GCg -3'
miRNA:   3'- ccGUCCUAGCUCAUG----UCGaGCGCuCG- -5'
26264 3' -54.4 NC_005345.2 + 24333 0.72 0.406756
Target:  5'- uGGCGGGAguccaacggCGGGaucCGGCUCGCGAa- -3'
miRNA:   3'- -CCGUCCUa--------GCUCau-GUCGAGCGCUcg -5'
26264 3' -54.4 NC_005345.2 + 6531 0.79 0.156966
Target:  5'- aGCAGuuUCGGGUGaucaccgaGGCUCGCGAGCu -3'
miRNA:   3'- cCGUCcuAGCUCAUg-------UCGAGCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 25539 0.7 0.506539
Target:  5'- cGGCAGGG------GCAGCUCGaCGAGUg -3'
miRNA:   3'- -CCGUCCUagcucaUGUCGAGC-GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 39069 0.75 0.254808
Target:  5'- aGGCGGcGAUCGAGUGgAcGCUCGCc-GCg -3'
miRNA:   3'- -CCGUC-CUAGCUCAUgU-CGAGCGcuCG- -5'
26264 3' -54.4 NC_005345.2 + 23408 0.72 0.406756
Target:  5'- aGCAGGG-CGG--GCAGCUCGuCGAGUu -3'
miRNA:   3'- cCGUCCUaGCUcaUGUCGAGC-GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 40175 0.69 0.537441
Target:  5'- cGGCGcgcagcugcGGAUCGAggccggcGUGCAGCUCG-GcAGCu -3'
miRNA:   3'- -CCGU---------CCUAGCU-------CAUGUCGAGCgC-UCG- -5'
26264 3' -54.4 NC_005345.2 + 37582 0.69 0.560219
Target:  5'- aGGCGGGcugcaggCGGGcgacCGGCUCGCGuuGCg -3'
miRNA:   3'- -CCGUCCua-----GCUCau--GUCGAGCGCu-CG- -5'
26264 3' -54.4 NC_005345.2 + 40347 0.75 0.275312
Target:  5'- uGGCGGGcgaCGGGUACGGC-CGUGGGg -3'
miRNA:   3'- -CCGUCCua-GCUCAUGUCGaGCGCUCg -5'
26264 3' -54.4 NC_005345.2 + 36907 0.72 0.391958
Target:  5'- aGCGGGAcCGGGUgagcgggucaucgccACGGCUCGgGAGg -3'
miRNA:   3'- cCGUCCUaGCUCA---------------UGUCGAGCgCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.