miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26264 3' -54.4 NC_005345.2 + 42593 1.13 0.000549
Target:  5'- cGGCAGGAUCGAGUACAGCUCGCGAGCc -3'
miRNA:   3'- -CCGUCCUAGCUCAUGUCGAGCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 9942 0.83 0.081699
Target:  5'- aGGUAGGuGUCGAGcaGCAGCUCGCGcGCg -3'
miRNA:   3'- -CCGUCC-UAGCUCa-UGUCGAGCGCuCG- -5'
26264 3' -54.4 NC_005345.2 + 14816 0.79 0.142001
Target:  5'- cGGCGGGcgCGGGUguggucgacgcccgaGCAGCUUGcCGGGCu -3'
miRNA:   3'- -CCGUCCuaGCUCA---------------UGUCGAGC-GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 6531 0.79 0.156966
Target:  5'- aGCAGuuUCGGGUGaucaccgaGGCUCGCGAGCu -3'
miRNA:   3'- cCGUCcuAGCUCAUg-------UCGAGCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 27886 0.77 0.185092
Target:  5'- cGGcCGGGuUCGAcGUACAGCUCgGCGAcGCg -3'
miRNA:   3'- -CC-GUCCuAGCU-CAUGUCGAG-CGCU-CG- -5'
26264 3' -54.4 NC_005345.2 + 31908 0.77 0.193834
Target:  5'- cGGCGGGugcaugggugcgagGUCGAGUAaAGCUCgGCGGGUg -3'
miRNA:   3'- -CCGUCC--------------UAGCUCAUgUCGAG-CGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 3810 0.76 0.217573
Target:  5'- gGGCA-GAUCGAGgccgcgcaGCAGCUCGCcGGCu -3'
miRNA:   3'- -CCGUcCUAGCUCa-------UGUCGAGCGcUCG- -5'
26264 3' -54.4 NC_005345.2 + 39069 0.75 0.254808
Target:  5'- aGGCGGcGAUCGAGUGgAcGCUCGCc-GCg -3'
miRNA:   3'- -CCGUC-CUAGCUCAUgU-CGAGCGcuCG- -5'
26264 3' -54.4 NC_005345.2 + 5279 0.75 0.254808
Target:  5'- gGGCucgGGGGUCGGGUACuGCgggggGCGGGCc -3'
miRNA:   3'- -CCG---UCCUAGCUCAUGuCGag---CGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 45674 0.75 0.275312
Target:  5'- cGCGGGuaacGUCGAGgcauguccgACAGCccgCGCGAGCu -3'
miRNA:   3'- cCGUCC----UAGCUCa--------UGUCGa--GCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 40347 0.75 0.275312
Target:  5'- uGGCGGGcgaCGGGUACGGC-CGUGGGg -3'
miRNA:   3'- -CCGUCCua-GCUCAUGUCGaGCGCUCg -5'
26264 3' -54.4 NC_005345.2 + 31758 0.73 0.328235
Target:  5'- uGCGGGGUgCGAGUGCGuCUCGgGuGCg -3'
miRNA:   3'- cCGUCCUA-GCUCAUGUcGAGCgCuCG- -5'
26264 3' -54.4 NC_005345.2 + 20335 0.73 0.359972
Target:  5'- gGGCAGGcgCGcGGUGCGGaccuugccgugCGUGAGCa -3'
miRNA:   3'- -CCGUCCuaGC-UCAUGUCga---------GCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 20411 0.73 0.3617
Target:  5'- uGCAGGGcCGAGUACAGgaaccCGaCGAGCg -3'
miRNA:   3'- cCGUCCUaGCUCAUGUCga---GC-GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 24815 0.73 0.3617
Target:  5'- gGGCGaccGGAucgugcUCGGGUucgACGGCUCGCGcaAGCg -3'
miRNA:   3'- -CCGU---CCU------AGCUCA---UGUCGAGCGC--UCG- -5'
26264 3' -54.4 NC_005345.2 + 36907 0.72 0.391958
Target:  5'- aGCGGGAcCGGGUgagcgggucaucgccACGGCUCGgGAGg -3'
miRNA:   3'- cCGUCCUaGCUCA---------------UGUCGAGCgCUCg -5'
26264 3' -54.4 NC_005345.2 + 43352 0.72 0.397467
Target:  5'- cGGCucgaccucGGGGUCGgccgGGUACGGCaCGcCGAGCa -3'
miRNA:   3'- -CCG--------UCCUAGC----UCAUGUCGaGC-GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 32349 0.72 0.397467
Target:  5'- gGGCGaGGUCGAGU-CGGUUgGCGAGg -3'
miRNA:   3'- -CCGUcCUAGCUCAuGUCGAgCGCUCg -5'
26264 3' -54.4 NC_005345.2 + 12512 0.72 0.397467
Target:  5'- cGCAGuacgCGGGUgaucucgcGCAGCUCGCgGAGCg -3'
miRNA:   3'- cCGUCcua-GCUCA--------UGUCGAGCG-CUCG- -5'
26264 3' -54.4 NC_005345.2 + 31244 0.72 0.405821
Target:  5'- gGGUccGGGGUCGGGUGCgcacucgGGUgCGCGGGUg -3'
miRNA:   3'- -CCG--UCCUAGCUCAUG-------UCGaGCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.