miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26264 3' -54.4 NC_005345.2 + 24333 0.72 0.406756
Target:  5'- uGGCGGGAguccaacggCGGGaucCGGCUCGCGAa- -3'
miRNA:   3'- -CCGUCCUa--------GCUCau-GUCGAGCGCUcg -5'
26264 3' -54.4 NC_005345.2 + 23408 0.72 0.406756
Target:  5'- aGCAGGG-CGG--GCAGCUCGuCGAGUu -3'
miRNA:   3'- cCGUCCUaGCUcaUGUCGAGC-GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 21299 0.71 0.424777
Target:  5'- gGGCgccgccgAGGAUCGgccacaccgGGUACAGCUCGguCGGGUc -3'
miRNA:   3'- -CCG-------UCCUAGC---------UCAUGUCGAGC--GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 31481 0.71 0.425739
Target:  5'- aGGCGGG--CGAGcGCGGCguaggCGcCGAGCa -3'
miRNA:   3'- -CCGUCCuaGCUCaUGUCGa----GC-GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 4464 0.71 0.425739
Target:  5'- cGGCGGGGgcccggCGGccGUGucCGGCUCGaCGAGCc -3'
miRNA:   3'- -CCGUCCUa-----GCU--CAU--GUCGAGC-GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 31726 0.71 0.435426
Target:  5'- cGGaCGGGGuUCGGGUGCAcCUCGgGuGCg -3'
miRNA:   3'- -CC-GUCCU-AGCUCAUGUcGAGCgCuCG- -5'
26264 3' -54.4 NC_005345.2 + 5569 0.71 0.435426
Target:  5'- gGGUGGGAggCGGGU-CAGUUgGCGAGg -3'
miRNA:   3'- -CCGUCCUa-GCUCAuGUCGAgCGCUCg -5'
26264 3' -54.4 NC_005345.2 + 11666 0.71 0.435426
Target:  5'- cGGCGGGAaCGucGUACcGCUCGCccGCg -3'
miRNA:   3'- -CCGUCCUaGCu-CAUGuCGAGCGcuCG- -5'
26264 3' -54.4 NC_005345.2 + 34512 0.71 0.445239
Target:  5'- aGGaCGcGGUCGAGgcgggccGCGGcCUCGCGGGCg -3'
miRNA:   3'- -CC-GUcCUAGCUCa------UGUC-GAGCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 6544 0.71 0.465228
Target:  5'- gGGCGGGGcggUGGGggACguGGCUaCGCGGGCg -3'
miRNA:   3'- -CCGUCCUa--GCUCa-UG--UCGA-GCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 10551 0.71 0.465228
Target:  5'- cGGCGGuGGcCGAGguaauccCGGC-CGCGAGCg -3'
miRNA:   3'- -CCGUC-CUaGCUCau-----GUCGaGCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 6835 0.7 0.475397
Target:  5'- gGGCGGGAUCGAc-AUGGUccUCGCG-GCg -3'
miRNA:   3'- -CCGUCCUAGCUcaUGUCG--AGCGCuCG- -5'
26264 3' -54.4 NC_005345.2 + 37715 0.7 0.475397
Target:  5'- uGCGGGAUCGcGcUGCGGCgcggCGCcGGCu -3'
miRNA:   3'- cCGUCCUAGCuC-AUGUCGa---GCGcUCG- -5'
26264 3' -54.4 NC_005345.2 + 25222 0.7 0.485675
Target:  5'- cGGCcGGucacCGGGUGCAGCUCGUaGAaccGCa -3'
miRNA:   3'- -CCGuCCua--GCUCAUGUCGAGCG-CU---CG- -5'
26264 3' -54.4 NC_005345.2 + 31165 0.7 0.485675
Target:  5'- cGCGGGGUCGaAGUGCGGgUgCGUacucGGGCg -3'
miRNA:   3'- cCGUCCUAGC-UCAUGUCgA-GCG----CUCG- -5'
26264 3' -54.4 NC_005345.2 + 12299 0.7 0.485675
Target:  5'- -uCGGGAUCGAGUGCcccgAGUgCGCG-GCg -3'
miRNA:   3'- ccGUCCUAGCUCAUG----UCGaGCGCuCG- -5'
26264 3' -54.4 NC_005345.2 + 19986 0.7 0.495014
Target:  5'- aGCGGGAucuuuucgcugaUCGGGgGCAGCucgcccaucaccuUCGCGAGUc -3'
miRNA:   3'- cCGUCCU------------AGCUCaUGUCG-------------AGCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 3423 0.7 0.496057
Target:  5'- cGGCGGGcgCGGcGgcggGCGGCgaUGCGGGCc -3'
miRNA:   3'- -CCGUCCuaGCU-Ca---UGUCGa-GCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 2777 0.7 0.506539
Target:  5'- cGGCGGccUCG-GUACGGCUUGUcGGCg -3'
miRNA:   3'- -CCGUCcuAGCuCAUGUCGAGCGcUCG- -5'
26264 3' -54.4 NC_005345.2 + 18805 0.7 0.506539
Target:  5'- gGGCAGGGUg----ACGGCggCGCGGGCc -3'
miRNA:   3'- -CCGUCCUAgcucaUGUCGa-GCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.