Results 21 - 40 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26264 | 3' | -54.4 | NC_005345.2 | + | 21632 | 0.68 | 0.604257 |
Target: 5'- gGGCGGGAgaUCGAuccucaGCGGCUCggGCGGGg -3' miRNA: 3'- -CCGUCCU--AGCUca----UGUCGAG--CGCUCg -5' |
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26264 | 3' | -54.4 | NC_005345.2 | + | 14606 | 0.69 | 0.571161 |
Target: 5'- cGGCuccGGAUCGAcggGUAC-GCcCGCGAGg -3' miRNA: 3'- -CCGu--CCUAGCU---CAUGuCGaGCGCUCg -5' |
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26264 | 3' | -54.4 | NC_005345.2 | + | 24333 | 0.72 | 0.406756 |
Target: 5'- uGGCGGGAguccaacggCGGGaucCGGCUCGCGAa- -3' miRNA: 3'- -CCGUCCUa--------GCUCau-GUCGAGCGCUcg -5' |
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26264 | 3' | -54.4 | NC_005345.2 | + | 40347 | 0.75 | 0.275312 |
Target: 5'- uGGCGGGcgaCGGGUACGGC-CGUGGGg -3' miRNA: 3'- -CCGUCCua-GCUCAUGUCGaGCGCUCg -5' |
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26264 | 3' | -54.4 | NC_005345.2 | + | 4814 | 0.67 | 0.703771 |
Target: 5'- cGGCAGcucggcGAuuUCGGGUACGcCUCGaUGGGCg -3' miRNA: 3'- -CCGUC------CU--AGCUCAUGUcGAGC-GCUCG- -5' |
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26264 | 3' | -54.4 | NC_005345.2 | + | 2353 | 0.67 | 0.667523 |
Target: 5'- uGGCGGGAUCGcgcaACGGCgcgugaccuccccgUCGCGcGCc -3' miRNA: 3'- -CCGUCCUAGCuca-UGUCG--------------AGCGCuCG- -5' |
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26264 | 3' | -54.4 | NC_005345.2 | + | 9489 | 0.69 | 0.549335 |
Target: 5'- cGGCuGaGAcCGAGUgGCAG-UCGCGGGCc -3' miRNA: 3'- -CCGuC-CUaGCUCA-UGUCgAGCGCUCG- -5' |
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26264 | 3' | -54.4 | NC_005345.2 | + | 39069 | 0.75 | 0.254808 |
Target: 5'- aGGCGGcGAUCGAGUGgAcGCUCGCc-GCg -3' miRNA: 3'- -CCGUC-CUAGCUCAUgU-CGAGCGcuCG- -5' |
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26264 | 3' | -54.4 | NC_005345.2 | + | 44132 | 0.68 | 0.637572 |
Target: 5'- uGGCuguGGAUCGuaUGCgGGCUCgucaccaugGCGAGCg -3' miRNA: 3'- -CCGu--CCUAGCucAUG-UCGAG---------CGCUCG- -5' |
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26264 | 3' | -54.4 | NC_005345.2 | + | 6531 | 0.79 | 0.156966 |
Target: 5'- aGCAGuuUCGGGUGaucaccgaGGCUCGCGAGCu -3' miRNA: 3'- cCGUCcuAGCUCAUg-------UCGAGCGCUCG- -5' |
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26264 | 3' | -54.4 | NC_005345.2 | + | 37582 | 0.69 | 0.560219 |
Target: 5'- aGGCGGGcugcaggCGGGcgacCGGCUCGCGuuGCg -3' miRNA: 3'- -CCGUCCua-----GCUCau--GUCGAGCGCu-CG- -5' |
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26264 | 3' | -54.4 | NC_005345.2 | + | 15441 | 0.68 | 0.615351 |
Target: 5'- aGCGGGGUCGGcacggaguuuGUGCAGCgucUGCcGGCu -3' miRNA: 3'- cCGUCCUAGCU----------CAUGUCGa--GCGcUCG- -5' |
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26264 | 3' | -54.4 | NC_005345.2 | + | 25539 | 0.7 | 0.506539 |
Target: 5'- cGGCAGGG------GCAGCUCGaCGAGUg -3' miRNA: 3'- -CCGUCCUagcucaUGUCGAGC-GCUCG- -5' |
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26264 | 3' | -54.4 | NC_005345.2 | + | 11666 | 0.71 | 0.435426 |
Target: 5'- cGGCGGGAaCGucGUACcGCUCGCccGCg -3' miRNA: 3'- -CCGUCCUaGCu-CAUGuCGAGCGcuCG- -5' |
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26264 | 3' | -54.4 | NC_005345.2 | + | 12512 | 0.72 | 0.397467 |
Target: 5'- cGCAGuacgCGGGUgaucucgcGCAGCUCGCgGAGCg -3' miRNA: 3'- cCGUCcua-GCUCA--------UGUCGAGCG-CUCG- -5' |
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26264 | 3' | -54.4 | NC_005345.2 | + | 45674 | 0.75 | 0.275312 |
Target: 5'- cGCGGGuaacGUCGAGgcauguccgACAGCccgCGCGAGCu -3' miRNA: 3'- cCGUCC----UAGCUCa--------UGUCGa--GCGCUCG- -5' |
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26264 | 3' | -54.4 | NC_005345.2 | + | 9869 | 0.66 | 0.714621 |
Target: 5'- aGCAGGGgcugcUCGAcGaGCAGCa-GCGGGCc -3' miRNA: 3'- cCGUCCU-----AGCU-CaUGUCGagCGCUCG- -5' |
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26264 | 3' | -54.4 | NC_005345.2 | + | 23679 | 0.67 | 0.703771 |
Target: 5'- cGGCcGG-UCGGGcggGCcgAGCgcaCGCGAGCg -3' miRNA: 3'- -CCGuCCuAGCUCa--UG--UCGa--GCGCUCG- -5' |
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26264 | 3' | -54.4 | NC_005345.2 | + | 40037 | 0.67 | 0.69285 |
Target: 5'- cGGCAGaGUCGA--GCAGCUCgaccacacaGCGGGg -3' miRNA: 3'- -CCGUCcUAGCUcaUGUCGAG---------CGCUCg -5' |
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26264 | 3' | -54.4 | NC_005345.2 | + | 9590 | 0.67 | 0.69285 |
Target: 5'- uGCGGGGcgugCGAgGUGCAGa--GCGAGUg -3' miRNA: 3'- cCGUCCUa---GCU-CAUGUCgagCGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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