miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26264 3' -54.4 NC_005345.2 + 8269 0.67 0.659773
Target:  5'- cGCGGGGUucaCGAGUGCccuuaGGUUCGcCGuGCu -3'
miRNA:   3'- cCGUCCUA---GCUCAUG-----UCGAGC-GCuCG- -5'
26264 3' -54.4 NC_005345.2 + 9489 0.69 0.549335
Target:  5'- cGGCuGaGAcCGAGUgGCAG-UCGCGGGCc -3'
miRNA:   3'- -CCGuC-CUaGCUCA-UGUCgAGCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 9590 0.67 0.69285
Target:  5'- uGCGGGGcgugCGAgGUGCAGa--GCGAGUg -3'
miRNA:   3'- cCGUCCUa---GCU-CAUGUCgagCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 9869 0.66 0.714621
Target:  5'- aGCAGGGgcugcUCGAcGaGCAGCa-GCGGGCc -3'
miRNA:   3'- cCGUCCU-----AGCU-CaUGUCGagCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 9942 0.83 0.081699
Target:  5'- aGGUAGGuGUCGAGcaGCAGCUCGCGcGCg -3'
miRNA:   3'- -CCGUCC-UAGCUCa-UGUCGAGCGCuCG- -5'
26264 3' -54.4 NC_005345.2 + 10551 0.71 0.465228
Target:  5'- cGGCGGuGGcCGAGguaauccCGGC-CGCGAGCg -3'
miRNA:   3'- -CCGUC-CUaGCUCau-----GUCGaGCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 11666 0.71 0.435426
Target:  5'- cGGCGGGAaCGucGUACcGCUCGCccGCg -3'
miRNA:   3'- -CCGUCCUaGCu-CAUGuCGAGCGcuCG- -5'
26264 3' -54.4 NC_005345.2 + 12299 0.7 0.485675
Target:  5'- -uCGGGAUCGAGUGCcccgAGUgCGCG-GCg -3'
miRNA:   3'- ccGUCCUAGCUCAUG----UCGaGCGCuCG- -5'
26264 3' -54.4 NC_005345.2 + 12444 0.68 0.637572
Target:  5'- cGCGGGcuaccUCGc--GCAGCUCGCGGGg -3'
miRNA:   3'- cCGUCCu----AGCucaUGUCGAGCGCUCg -5'
26264 3' -54.4 NC_005345.2 + 12469 0.66 0.757074
Target:  5'- nGGCAGG--CGAGgcgcgACgaucucgcggAGCUCGcCGAGUg -3'
miRNA:   3'- -CCGUCCuaGCUCa----UG----------UCGAGC-GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 12512 0.72 0.397467
Target:  5'- cGCAGuacgCGGGUgaucucgcGCAGCUCGCgGAGCg -3'
miRNA:   3'- cCGUCcua-GCUCA--------UGUCGAGCG-CUCG- -5'
26264 3' -54.4 NC_005345.2 + 14606 0.69 0.571161
Target:  5'- cGGCuccGGAUCGAcggGUAC-GCcCGCGAGg -3'
miRNA:   3'- -CCGu--CCUAGCU---CAUGuCGaGCGCUCg -5'
26264 3' -54.4 NC_005345.2 + 14816 0.79 0.142001
Target:  5'- cGGCGGGcgCGGGUguggucgacgcccgaGCAGCUUGcCGGGCu -3'
miRNA:   3'- -CCGUCCuaGCUCA---------------UGUCGAGC-GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 15441 0.68 0.615351
Target:  5'- aGCGGGGUCGGcacggaguuuGUGCAGCgucUGCcGGCu -3'
miRNA:   3'- cCGUCCUAGCU----------CAUGUCGa--GCGcUCG- -5'
26264 3' -54.4 NC_005345.2 + 15990 0.67 0.670839
Target:  5'- cGCGGcGUCGAGguuCA--UCGCGAGCa -3'
miRNA:   3'- cCGUCcUAGCUCau-GUcgAGCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 16372 0.66 0.736061
Target:  5'- cGCGGugaucgcgacGAUCGGGUucguCGGCUCGUacaccgcuguGAGCa -3'
miRNA:   3'- cCGUC----------CUAGCUCAu---GUCGAGCG----------CUCG- -5'
26264 3' -54.4 NC_005345.2 + 16866 0.68 0.593189
Target:  5'- uGCAGGcgCG-GUACGGCcgaGCGuGGCg -3'
miRNA:   3'- cCGUCCuaGCuCAUGUCGag-CGC-UCG- -5'
26264 3' -54.4 NC_005345.2 + 18154 0.66 0.757074
Target:  5'- cGGC---GUCGGGUACAGCcucggcucggUGUGGGCg -3'
miRNA:   3'- -CCGuccUAGCUCAUGUCGa---------GCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 18805 0.7 0.506539
Target:  5'- gGGCAGGGUg----ACGGCggCGCGGGCc -3'
miRNA:   3'- -CCGUCCUAgcucaUGUCGa-GCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 19258 0.69 0.549335
Target:  5'- cGCAGGAcCGGGaugccgACGGCggcCGCGuGCg -3'
miRNA:   3'- cCGUCCUaGCUCa-----UGUCGa--GCGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.