miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26264 3' -54.4 NC_005345.2 + 5663 0.68 0.64868
Target:  5'- uGGCGGcGAUCGAGgucACcuguGCgUCgGUGAGCg -3'
miRNA:   3'- -CCGUC-CUAGCUCa--UGu---CG-AG-CGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 31949 0.67 0.69285
Target:  5'- uGCGGGugCGGGUGCGGg-UGCGGGUg -3'
miRNA:   3'- cCGUCCuaGCUCAUGUCgaGCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 31207 0.67 0.681869
Target:  5'- cGGCGGGugcgcaccCGGGUGCGGC-CGgGuGUa -3'
miRNA:   3'- -CCGUCCua------GCUCAUGUCGaGCgCuCG- -5'
26264 3' -54.4 NC_005345.2 + 15990 0.67 0.670839
Target:  5'- cGCGGcGUCGAGguuCA--UCGCGAGCa -3'
miRNA:   3'- cCGUCcUAGCUCau-GUcgAGCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 38454 0.67 0.659773
Target:  5'- cGCAGGAcaggcCGGGcACAGC--GCGGGCa -3'
miRNA:   3'- cCGUCCUa----GCUCaUGUCGagCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 8269 0.67 0.659773
Target:  5'- cGCGGGGUucaCGAGUGCccuuaGGUUCGcCGuGCu -3'
miRNA:   3'- cCGUCCUA---GCUCAUG-----UCGAGC-GCuCG- -5'
26264 3' -54.4 NC_005345.2 + 44226 0.67 0.659773
Target:  5'- cGGCcGGAgCGcacGUgcggcugccgcaGCAGCUCGgCGAGCa -3'
miRNA:   3'- -CCGuCCUaGCu--CA------------UGUCGAGC-GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 21991 0.67 0.656447
Target:  5'- cGGCGGGAcgccgcgcagcgccUCGG--GCAGCUCGaCGccGGCc -3'
miRNA:   3'- -CCGUCCU--------------AGCUcaUGUCGAGC-GC--UCG- -5'
26264 3' -54.4 NC_005345.2 + 34743 0.68 0.65312
Target:  5'- cGGCAGGcGUCGGcgacGUGCAGCcggaUCGgcaccggccggucgcCGAGCu -3'
miRNA:   3'- -CCGUCC-UAGCU----CAUGUCG----AGC---------------GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 33037 0.67 0.703771
Target:  5'- cGCGGGGugcgguccggcUCGAcGUugGGCUCGUaGGUg -3'
miRNA:   3'- cCGUCCU-----------AGCU-CAugUCGAGCGcUCG- -5'
26264 3' -54.4 NC_005345.2 + 34136 0.67 0.703771
Target:  5'- uGGcCAGaGAUCGAGUggcGCGGCg-GCG-GCc -3'
miRNA:   3'- -CC-GUC-CUAGCUCA---UGUCGagCGCuCG- -5'
26264 3' -54.4 NC_005345.2 + 34687 0.67 0.703771
Target:  5'- gGGCgucgGGGAUgccgagCGAGU-CGGCgaGCGAGCa -3'
miRNA:   3'- -CCG----UCCUA------GCUCAuGUCGagCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 25433 0.66 0.757074
Target:  5'- cGcCAGGAagCGAGcGCAgagccccguaccGCUCGCGuGCg -3'
miRNA:   3'- cC-GUCCUa-GCUCaUGU------------CGAGCGCuCG- -5'
26264 3' -54.4 NC_005345.2 + 27770 0.66 0.757074
Target:  5'- uGCAGGAcgaaCGGGcGCAGCUCG-GuGUa -3'
miRNA:   3'- cCGUCCUa---GCUCaUGUCGAGCgCuCG- -5'
26264 3' -54.4 NC_005345.2 + 43636 0.66 0.746626
Target:  5'- cGGCGGGGUCGcGGUAgUAGCgaccccgcucggUUGCGAccGCc -3'
miRNA:   3'- -CCGUCCUAGC-UCAU-GUCG------------AGCGCU--CG- -5'
26264 3' -54.4 NC_005345.2 + 33241 0.66 0.736061
Target:  5'- cGGCgaaGGcGAUCGucacggGGUACAGCUCGgugccCGGGUc -3'
miRNA:   3'- -CCG---UC-CUAGC------UCAUGUCGAGC-----GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 35864 0.66 0.736061
Target:  5'- gGGCgGGGGUCGGGgGCGucgucGC-CGaCGAGCu -3'
miRNA:   3'- -CCG-UCCUAGCUCaUGU-----CGaGC-GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 1111 0.66 0.725388
Target:  5'- cGCcGGA-CGAGcACAGC-CGCGuAGCc -3'
miRNA:   3'- cCGuCCUaGCUCaUGUCGaGCGC-UCG- -5'
26264 3' -54.4 NC_005345.2 + 27312 0.66 0.725388
Target:  5'- uGGUGGGGUCGAGU--GGCUgagagGCGAucuGCg -3'
miRNA:   3'- -CCGUCCUAGCUCAugUCGAg----CGCU---CG- -5'
26264 3' -54.4 NC_005345.2 + 36346 0.66 0.714621
Target:  5'- cGGCGGGc-CGA--GCGGCUCggGCGGGUc -3'
miRNA:   3'- -CCGUCCuaGCUcaUGUCGAG--CGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.