miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26264 3' -54.4 NC_005345.2 + 25539 0.7 0.506539
Target:  5'- cGGCAGGG------GCAGCUCGaCGAGUg -3'
miRNA:   3'- -CCGUCCUagcucaUGUCGAGC-GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 31014 0.7 0.517114
Target:  5'- cGCcgGGGAUCGGGacgACGGCgccgGCGAGUg -3'
miRNA:   3'- cCG--UCCUAGCUCa--UGUCGag--CGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 41091 0.7 0.517114
Target:  5'- cGGCGGcGAgcUUGAucUGCAGCUCGUGcAGCu -3'
miRNA:   3'- -CCGUC-CU--AGCUc-AUGUCGAGCGC-UCG- -5'
26264 3' -54.4 NC_005345.2 + 29644 0.7 0.527776
Target:  5'- gGGCGGGAgaUCGAGggagACGGggCGgGAGa -3'
miRNA:   3'- -CCGUCCU--AGCUCa---UGUCgaGCgCUCg -5'
26264 3' -54.4 NC_005345.2 + 40175 0.69 0.537441
Target:  5'- cGGCGcgcagcugcGGAUCGAggccggcGUGCAGCUCG-GcAGCu -3'
miRNA:   3'- -CCGU---------CCUAGCU-------CAUGUCGAGCgC-UCG- -5'
26264 3' -54.4 NC_005345.2 + 39596 0.69 0.538519
Target:  5'- cGCGGGGacuaCGAGggGCAGCUCgGCGuGUg -3'
miRNA:   3'- cCGUCCUa---GCUCa-UGUCGAG-CGCuCG- -5'
26264 3' -54.4 NC_005345.2 + 19258 0.69 0.549335
Target:  5'- cGCAGGAcCGGGaugccgACGGCggcCGCGuGCg -3'
miRNA:   3'- cCGUCCUaGCUCa-----UGUCGa--GCGCuCG- -5'
26264 3' -54.4 NC_005345.2 + 30856 0.69 0.549335
Target:  5'- cGGCgAGGA-CGA--ACAGCgCGCGGGUg -3'
miRNA:   3'- -CCG-UCCUaGCUcaUGUCGaGCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 44802 0.69 0.549335
Target:  5'- gGGCAuGGGguucuucgCGAGgu--GCUCGCGGGUg -3'
miRNA:   3'- -CCGU-CCUa-------GCUCauguCGAGCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 9489 0.69 0.549335
Target:  5'- cGGCuGaGAcCGAGUgGCAG-UCGCGGGCc -3'
miRNA:   3'- -CCGuC-CUaGCUCA-UGUCgAGCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 20862 0.69 0.549335
Target:  5'- uGGCGGGcgCGAGcuugucgACgAGCuUCGCGAucGCg -3'
miRNA:   3'- -CCGUCCuaGCUCa------UG-UCG-AGCGCU--CG- -5'
26264 3' -54.4 NC_005345.2 + 37582 0.69 0.560219
Target:  5'- aGGCGGGcugcaggCGGGcgacCGGCUCGCGuuGCg -3'
miRNA:   3'- -CCGUCCua-----GCUCau--GUCGAGCGCu-CG- -5'
26264 3' -54.4 NC_005345.2 + 38254 0.69 0.560219
Target:  5'- aGGCGuGAUCGAugacGUGCGGg-UGCGGGCa -3'
miRNA:   3'- -CCGUcCUAGCU----CAUGUCgaGCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 14606 0.69 0.571161
Target:  5'- cGGCuccGGAUCGAcggGUAC-GCcCGCGAGg -3'
miRNA:   3'- -CCGu--CCUAGCU---CAUGuCGaGCGCUCg -5'
26264 3' -54.4 NC_005345.2 + 16866 0.68 0.593189
Target:  5'- uGCAGGcgCG-GUACGGCcgaGCGuGGCg -3'
miRNA:   3'- cCGUCCuaGCuCAUGUCGag-CGC-UCG- -5'
26264 3' -54.4 NC_005345.2 + 36260 0.68 0.593189
Target:  5'- cGCGGcGAUCGAGgcgaGCGGCcacccggCGgCGAGCc -3'
miRNA:   3'- cCGUC-CUAGCUCa---UGUCGa------GC-GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 1940 0.68 0.603149
Target:  5'- gGGCGGGugcgaaugcacguGUcCGGGUcCGGCUC-CGGGCa -3'
miRNA:   3'- -CCGUCC-------------UA-GCUCAuGUCGAGcGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 8070 0.68 0.603149
Target:  5'- aGCcuGGUCGuGUACAGCggacgacagcuguUCGgCGAGCa -3'
miRNA:   3'- cCGucCUAGCuCAUGUCG-------------AGC-GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 4123 0.68 0.604257
Target:  5'- cGGUuGGcguUCGAGcgGCuGCUCGCG-GCg -3'
miRNA:   3'- -CCGuCCu--AGCUCa-UGuCGAGCGCuCG- -5'
26264 3' -54.4 NC_005345.2 + 21632 0.68 0.604257
Target:  5'- gGGCGGGAgaUCGAuccucaGCGGCUCggGCGGGg -3'
miRNA:   3'- -CCGUCCU--AGCUca----UGUCGAG--CGCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.