miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26264 3' -54.4 NC_005345.2 + 48562 0.66 0.746626
Target:  5'- gGGCGucgcGGAUgCGGGcGCcgaugAGCUCGCG-GCg -3'
miRNA:   3'- -CCGU----CCUA-GCUCaUG-----UCGAGCGCuCG- -5'
26264 3' -54.4 NC_005345.2 + 45674 0.75 0.275312
Target:  5'- cGCGGGuaacGUCGAGgcauguccgACAGCccgCGCGAGCu -3'
miRNA:   3'- cCGUCC----UAGCUCa--------UGUCGa--GCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 44802 0.69 0.549335
Target:  5'- gGGCAuGGGguucuucgCGAGgu--GCUCGCGGGUg -3'
miRNA:   3'- -CCGU-CCUa-------GCUCauguCGAGCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 44226 0.67 0.659773
Target:  5'- cGGCcGGAgCGcacGUgcggcugccgcaGCAGCUCGgCGAGCa -3'
miRNA:   3'- -CCGuCCUaGCu--CA------------UGUCGAGC-GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 44132 0.68 0.637572
Target:  5'- uGGCuguGGAUCGuaUGCgGGCUCgucaccaugGCGAGCg -3'
miRNA:   3'- -CCGu--CCUAGCucAUG-UCGAG---------CGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 44041 0.68 0.637572
Target:  5'- cGUAGGAgggcaUCGGGaUGCcgcGCUCGCG-GCg -3'
miRNA:   3'- cCGUCCU-----AGCUC-AUGu--CGAGCGCuCG- -5'
26264 3' -54.4 NC_005345.2 + 43636 0.66 0.746626
Target:  5'- cGGCGGGGUCGcGGUAgUAGCgaccccgcucggUUGCGAccGCc -3'
miRNA:   3'- -CCGUCCUAGC-UCAU-GUCG------------AGCGCU--CG- -5'
26264 3' -54.4 NC_005345.2 + 43352 0.72 0.397467
Target:  5'- cGGCucgaccucGGGGUCGgccgGGUACGGCaCGcCGAGCa -3'
miRNA:   3'- -CCG--------UCCUAGC----UCAUGUCGaGC-GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 42593 1.13 0.000549
Target:  5'- cGGCAGGAUCGAGUACAGCUCGCGAGCc -3'
miRNA:   3'- -CCGUCCUAGCUCAUGUCGAGCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 41541 0.68 0.61424
Target:  5'- cGGCGaccuGGUCGAcgacgucGUGCGcgcgcucgccguGCUCGCGGGCg -3'
miRNA:   3'- -CCGUc---CUAGCU-------CAUGU------------CGAGCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 41091 0.7 0.517114
Target:  5'- cGGCGGcGAgcUUGAucUGCAGCUCGUGcAGCu -3'
miRNA:   3'- -CCGUC-CU--AGCUc-AUGUCGAGCGC-UCG- -5'
26264 3' -54.4 NC_005345.2 + 40759 0.68 0.626459
Target:  5'- cGGCAGcGGcucgUCGGGccgguCGGCcggCGCGGGCg -3'
miRNA:   3'- -CCGUC-CU----AGCUCau---GUCGa--GCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 40347 0.75 0.275312
Target:  5'- uGGCGGGcgaCGGGUACGGC-CGUGGGg -3'
miRNA:   3'- -CCGUCCua-GCUCAUGUCGaGCGCUCg -5'
26264 3' -54.4 NC_005345.2 + 40175 0.69 0.537441
Target:  5'- cGGCGcgcagcugcGGAUCGAggccggcGUGCAGCUCG-GcAGCu -3'
miRNA:   3'- -CCGU---------CCUAGCU-------CAUGUCGAGCgC-UCG- -5'
26264 3' -54.4 NC_005345.2 + 40037 0.67 0.69285
Target:  5'- cGGCAGaGUCGA--GCAGCUCgaccacacaGCGGGg -3'
miRNA:   3'- -CCGUCcUAGCUcaUGUCGAG---------CGCUCg -5'
26264 3' -54.4 NC_005345.2 + 39596 0.69 0.538519
Target:  5'- cGCGGGGacuaCGAGggGCAGCUCgGCGuGUg -3'
miRNA:   3'- cCGUCCUa---GCUCa-UGUCGAG-CGCuCG- -5'
26264 3' -54.4 NC_005345.2 + 39069 0.75 0.254808
Target:  5'- aGGCGGcGAUCGAGUGgAcGCUCGCc-GCg -3'
miRNA:   3'- -CCGUC-CUAGCUCAUgU-CGAGCGcuCG- -5'
26264 3' -54.4 NC_005345.2 + 38454 0.67 0.659773
Target:  5'- cGCAGGAcaggcCGGGcACAGC--GCGGGCa -3'
miRNA:   3'- cCGUCCUa----GCUCaUGUCGagCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 38254 0.69 0.560219
Target:  5'- aGGCGuGAUCGAugacGUGCGGg-UGCGGGCa -3'
miRNA:   3'- -CCGUcCUAGCU----CAUGUCgaGCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 37910 0.68 0.637572
Target:  5'- cGGCcGGAgUCGAGU-CAGCgcguUCGCGGacGCc -3'
miRNA:   3'- -CCGuCCU-AGCUCAuGUCG----AGCGCU--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.