miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26265 3' -55.2 NC_005345.2 + 4885 0.66 0.703771
Target:  5'- cCGgcgCCGCUGCGagucgaUGCUcgccgAGCUGcUGCGGCa -3'
miRNA:   3'- -GCa--GGCGGCGU------AUGG-----UUGAC-ACGCUG- -5'
26265 3' -55.2 NC_005345.2 + 5280 0.66 0.703771
Target:  5'- gCGcUCCGCCGCGgagucccgGCCGACgccccGU-CGACc -3'
miRNA:   3'- -GC-AGGCGGCGUa-------UGGUUGa----CAcGCUG- -5'
26265 3' -55.2 NC_005345.2 + 41121 0.66 0.69285
Target:  5'- aCGcCCGCgGUAcggggcuCCGACUG-GCGGCu -3'
miRNA:   3'- -GCaGGCGgCGUau-----GGUUGACaCGCUG- -5'
26265 3' -55.2 NC_005345.2 + 46010 0.66 0.681869
Target:  5'- ---aCGCCGUcgGCaCGGCUGUGCaguGGCg -3'
miRNA:   3'- gcagGCGGCGuaUG-GUUGACACG---CUG- -5'
26265 3' -55.2 NC_005345.2 + 35584 0.66 0.681869
Target:  5'- uCGUCgCGCCGcCGUGCCcguggaUGUGguCGACg -3'
miRNA:   3'- -GCAG-GCGGC-GUAUGGuug---ACAC--GCUG- -5'
26265 3' -55.2 NC_005345.2 + 45813 0.66 0.670839
Target:  5'- uCGUCCGUCGUcgcgaccgugacGUGCaCGGCg--GCGGCg -3'
miRNA:   3'- -GCAGGCGGCG------------UAUG-GUUGacaCGCUG- -5'
26265 3' -55.2 NC_005345.2 + 22318 0.66 0.670839
Target:  5'- uCGgCgCGCCGgGUGCCGGCagcagUGaUGCGGCg -3'
miRNA:   3'- -GCaG-GCGGCgUAUGGUUG-----AC-ACGCUG- -5'
26265 3' -55.2 NC_005345.2 + 40736 0.66 0.670839
Target:  5'- gCGUCCaGCCGCGccccgucgACCGGCa--GCGGCu -3'
miRNA:   3'- -GCAGG-CGGCGUa-------UGGUUGacaCGCUG- -5'
26265 3' -55.2 NC_005345.2 + 37494 0.66 0.670839
Target:  5'- aGUUgGCCGC-UACCGccGCcGUGCaGGCg -3'
miRNA:   3'- gCAGgCGGCGuAUGGU--UGaCACG-CUG- -5'
26265 3' -55.2 NC_005345.2 + 38365 0.66 0.670839
Target:  5'- cCGcCUGCCGCA-GCgCGGCUGUcuCGACg -3'
miRNA:   3'- -GCaGGCGGCGUaUG-GUUGACAc-GCUG- -5'
26265 3' -55.2 NC_005345.2 + 27096 0.66 0.668629
Target:  5'- uGUCUGCCGuCAUgGCCGACaUGcucggcgccacgGCGGCa -3'
miRNA:   3'- gCAGGCGGC-GUA-UGGUUG-ACa-----------CGCUG- -5'
26265 3' -55.2 NC_005345.2 + 7842 0.66 0.659773
Target:  5'- gCGUCCaGCCGCcggcGCCGGCaccgagGCGGCc -3'
miRNA:   3'- -GCAGG-CGGCGua--UGGUUGaca---CGCUG- -5'
26265 3' -55.2 NC_005345.2 + 5648 0.66 0.659773
Target:  5'- gGUUCGCCGCG-ACC--UUG-GCGGCg -3'
miRNA:   3'- gCAGGCGGCGUaUGGuuGACaCGCUG- -5'
26265 3' -55.2 NC_005345.2 + 1239 0.67 0.64868
Target:  5'- aCGUCCGuUCGCGgACCuGC-GUGCGGa -3'
miRNA:   3'- -GCAGGC-GGCGUaUGGuUGaCACGCUg -5'
26265 3' -55.2 NC_005345.2 + 30164 0.67 0.64868
Target:  5'- uCGUcCCGCCG---GCCAGCg--GCGACc -3'
miRNA:   3'- -GCA-GGCGGCguaUGGUUGacaCGCUG- -5'
26265 3' -55.2 NC_005345.2 + 14818 0.67 0.637572
Target:  5'- gGUCUucgGCCuGCGUGCCGAacaggGCGACg -3'
miRNA:   3'- gCAGG---CGG-CGUAUGGUUgaca-CGCUG- -5'
26265 3' -55.2 NC_005345.2 + 18783 0.67 0.615351
Target:  5'- gCGcCCGCCGCGggcUGCCGucggGCaggGUGaCGGCg -3'
miRNA:   3'- -GCaGGCGGCGU---AUGGU----UGa--CAC-GCUG- -5'
26265 3' -55.2 NC_005345.2 + 23567 0.68 0.582153
Target:  5'- uGUCgGCCGCGU-CCgAGCUGcggcUGCGGg -3'
miRNA:   3'- gCAGgCGGCGUAuGG-UUGAC----ACGCUg -5'
26265 3' -55.2 NC_005345.2 + 8725 0.68 0.582153
Target:  5'- uCGUCCGUCGCcggcggcgauccGUACgGACgcgucggcgGUGUGGCu -3'
miRNA:   3'- -GCAGGCGGCG------------UAUGgUUGa--------CACGCUG- -5'
26265 3' -55.2 NC_005345.2 + 47724 0.68 0.571161
Target:  5'- aG-CUGCgGC-UGCCAGCUGUGCa-- -3'
miRNA:   3'- gCaGGCGgCGuAUGGUUGACACGcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.