miRNA display CGI


Results 21 - 40 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26265 5' -58.7 NC_005345.2 + 44692 0.67 0.486631
Target:  5'- -gACGCGCCacucaGGGGU-GGGCGUG-CCa -3'
miRNA:   3'- ggUGUGCGG-----CUCCAgCCCGUACaGGc -5'
26265 5' -58.7 NC_005345.2 + 28626 0.67 0.486631
Target:  5'- aCGCACuacCCGgaaggguuuuucAGGUCGGGCAU-UCCGc -3'
miRNA:   3'- gGUGUGc--GGC------------UCCAGCCCGUAcAGGC- -5'
26265 5' -58.7 NC_005345.2 + 5749 0.67 0.476729
Target:  5'- gCCGCA-GCCGAGGacugcgcCGaGGCG-GUCCGc -3'
miRNA:   3'- -GGUGUgCGGCUCCa------GC-CCGUaCAGGC- -5'
26265 5' -58.7 NC_005345.2 + 18187 0.67 0.472796
Target:  5'- aCCGCGCGCCGuuccaaugcacccGGUCGcGGcCGUGcaCCGu -3'
miRNA:   3'- -GGUGUGCGGCu------------CCAGC-CC-GUACa-GGC- -5'
26265 5' -58.7 NC_005345.2 + 32543 0.67 0.466928
Target:  5'- gCCG-ACGCCGAgggGGUCGGGCcacgCCa -3'
miRNA:   3'- -GGUgUGCGGCU---CCAGCCCGuacaGGc -5'
26265 5' -58.7 NC_005345.2 + 7299 0.67 0.465954
Target:  5'- gUACgACGCCGAGGUCGuccccgaugagucGGCGgacgCCGa -3'
miRNA:   3'- gGUG-UGCGGCUCCAGC-------------CCGUaca-GGC- -5'
26265 5' -58.7 NC_005345.2 + 15967 0.67 0.464008
Target:  5'- gCCGCGaucguCGCCGAGGUCguccguaccucuguGGGCGacgugcUGcCCGa -3'
miRNA:   3'- -GGUGU-----GCGGCUCCAG--------------CCCGU------ACaGGC- -5'
26265 5' -58.7 NC_005345.2 + 31457 0.67 0.457233
Target:  5'- gCgAgGCGCCGGGGUgCGGGUGUGaggCgGg -3'
miRNA:   3'- -GgUgUGCGGCUCCA-GCCCGUACa--GgC- -5'
26265 5' -58.7 NC_005345.2 + 14793 0.67 0.446694
Target:  5'- uCCAUcgcgaacagugcgGCGCCGAGGucuUCGGccuGCGUG-CCGa -3'
miRNA:   3'- -GGUG-------------UGCGGCUCC---AGCC---CGUACaGGC- -5'
26265 5' -58.7 NC_005345.2 + 47941 0.68 0.438172
Target:  5'- aCCGCGCGgCGuGGcccgCGGGCcgGacugCCGa -3'
miRNA:   3'- -GGUGUGCgGCuCCa---GCCCGuaCa---GGC- -5'
26265 5' -58.7 NC_005345.2 + 23662 0.68 0.426029
Target:  5'- ---gGCGCCGAccagggucgcggccGGUCGGGCGgg-CCGa -3'
miRNA:   3'- ggugUGCGGCU--------------CCAGCCCGUacaGGC- -5'
26265 5' -58.7 NC_005345.2 + 30159 0.68 0.419575
Target:  5'- cCCGCucGgGCCGAGGcUCGGGCAUcgaCGc -3'
miRNA:   3'- -GGUG--UgCGGCUCC-AGCCCGUAcagGC- -5'
26265 5' -58.7 NC_005345.2 + 27970 0.68 0.419575
Target:  5'- aCCACAagGCCGAGGcCGcgaaguacaaGGCGcUGUCCc -3'
miRNA:   3'- -GGUGUg-CGGCUCCaGC----------CCGU-ACAGGc -5'
26265 5' -58.7 NC_005345.2 + 40247 0.68 0.419575
Target:  5'- uCCugGCGagcggggaCGGGGcgccggCGGGCAUgaGUCCGg -3'
miRNA:   3'- -GGugUGCg-------GCUCCa-----GCCCGUA--CAGGC- -5'
26265 5' -58.7 NC_005345.2 + 40213 0.68 0.419575
Target:  5'- gCAgcUACGUCGAgacggugccGGUCGGGCAguUCCGg -3'
miRNA:   3'- gGU--GUGCGGCU---------CCAGCCCGUacAGGC- -5'
26265 5' -58.7 NC_005345.2 + 1219 0.68 0.401463
Target:  5'- gCCACGCuUCG-GGUCGGcGUAcGUCCGu -3'
miRNA:   3'- -GGUGUGcGGCuCCAGCC-CGUaCAGGC- -5'
26265 5' -58.7 NC_005345.2 + 26691 0.68 0.392596
Target:  5'- gCUGCACGuccCCGAGGcggCGuGGCAUGUCg- -3'
miRNA:   3'- -GGUGUGC---GGCUCCa--GC-CCGUACAGgc -5'
26265 5' -58.7 NC_005345.2 + 23043 0.69 0.383857
Target:  5'- gCUGCAuccCGCCGAGGUCGuGCAcaucgccgcUGUCUGc -3'
miRNA:   3'- -GGUGU---GCGGCUCCAGCcCGU---------ACAGGC- -5'
26265 5' -58.7 NC_005345.2 + 33898 0.69 0.383857
Target:  5'- cUCGCGCgGCCGGGcagcugauccGUaCGGGCAUGUCa- -3'
miRNA:   3'- -GGUGUG-CGGCUC----------CA-GCCCGUACAGgc -5'
26265 5' -58.7 NC_005345.2 + 12765 0.69 0.366771
Target:  5'- cCCACACGCCGcGGccgCGGaGCGcGcCCGc -3'
miRNA:   3'- -GGUGUGCGGCuCCa--GCC-CGUaCaGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.