miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26266 5' -55.6 NC_005345.2 + 41748 1.06 0.001192
Target:  5'- gGUCGAACGCGACCAUGCGGGCCUUAUg -3'
miRNA:   3'- -CAGCUUGCGCUGGUACGCCCGGAAUA- -5'
26266 5' -55.6 NC_005345.2 + 2036 0.82 0.065938
Target:  5'- cGUCGAgcgggcccgGCGCGGCCcgGCGGGCCg--- -3'
miRNA:   3'- -CAGCU---------UGCGCUGGuaCGCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 19078 0.79 0.108117
Target:  5'- gGUCu-ACGCGAUCGUGCGGGCCg--- -3'
miRNA:   3'- -CAGcuUGCGCUGGUACGCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 24616 0.74 0.240939
Target:  5'- -aCGggUGCGugcugcacgauccGCCGUGCGGGCCg--- -3'
miRNA:   3'- caGCuuGCGC-------------UGGUACGCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 29317 0.73 0.254621
Target:  5'- -gUGAACGCGACCGUGCcGGUCa--- -3'
miRNA:   3'- caGCUUGCGCUGGUACGcCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 38423 0.71 0.34516
Target:  5'- aUCGAGCGCGGCCAU-CcGGCCg--- -3'
miRNA:   3'- cAGCUUGCGCUGGUAcGcCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 44760 0.7 0.380075
Target:  5'- uGUCGAuCGCGcUCAUGCGGcGCCg--- -3'
miRNA:   3'- -CAGCUuGCGCuGGUACGCC-CGGaaua -5'
26266 5' -55.6 NC_005345.2 + 11705 0.69 0.426918
Target:  5'- aUCGAcgGC-CGACCA-GCGGGCCg--- -3'
miRNA:   3'- cAGCU--UGcGCUGGUaCGCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 23672 0.69 0.436691
Target:  5'- --aGGGuCGCGGCCGgucggGCGGGCCg--- -3'
miRNA:   3'- cagCUU-GCGCUGGUa----CGCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 515 0.69 0.436691
Target:  5'- gGUCaGGACGCcGCCcUGUGGGCCg--- -3'
miRNA:   3'- -CAG-CUUGCGcUGGuACGCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 2445 0.69 0.436691
Target:  5'- cUCGAACGCGuCCcgGUGuaGGCCUg-- -3'
miRNA:   3'- cAGCUUGCGCuGGuaCGC--CCGGAaua -5'
26266 5' -55.6 NC_005345.2 + 24748 0.69 0.446591
Target:  5'- cGUCGGACGCGuggcugucgcaGCCcgaaGUGCGGGCg---- -3'
miRNA:   3'- -CAGCUUGCGC-----------UGG----UACGCCCGgaaua -5'
26266 5' -55.6 NC_005345.2 + 3425 0.69 0.446591
Target:  5'- -gCGGGCGCGGCgGcgggcggcgaUGCGGGCCc--- -3'
miRNA:   3'- caGCUUGCGCUGgU----------ACGCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 42803 0.69 0.446591
Target:  5'- -gCGGAUGCGGCCAaGuUGGGCCg--- -3'
miRNA:   3'- caGCUUGCGCUGGUaC-GCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 18209 0.69 0.446591
Target:  5'- -cCGGuCGCGGCCGUgcaccgugaGCGGGCCg--- -3'
miRNA:   3'- caGCUuGCGCUGGUA---------CGCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 18146 0.69 0.466758
Target:  5'- gGUCGGcACGUaggccgGACCggGCGGGCCg--- -3'
miRNA:   3'- -CAGCU-UGCG------CUGGuaCGCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 2371 0.69 0.477017
Target:  5'- -cCGGuCGCGACCucGCGGGCCc--- -3'
miRNA:   3'- caGCUuGCGCUGGuaCGCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 11266 0.68 0.487386
Target:  5'- -aCGGGCaccgccGCGACCGUcCGGGCCUg-- -3'
miRNA:   3'- caGCUUG------CGCUGGUAcGCCCGGAaua -5'
26266 5' -55.6 NC_005345.2 + 27123 0.68 0.529856
Target:  5'- cUCGGcCGgGACCGUccgGCGGGCCc--- -3'
miRNA:   3'- cAGCUuGCgCUGGUA---CGCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 21837 0.68 0.529856
Target:  5'- aUCGAcugcuGCGCGGCaugCGUGCGGGCg---- -3'
miRNA:   3'- cAGCU-----UGCGCUG---GUACGCCCGgaaua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.