miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26266 5' -55.6 NC_005345.2 + 515 0.69 0.436691
Target:  5'- gGUCaGGACGCcGCCcUGUGGGCCg--- -3'
miRNA:   3'- -CAG-CUUGCGcUGGuACGCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 654 0.66 0.606968
Target:  5'- -gUGAGCGgGACCGUGCGGaacCCg--- -3'
miRNA:   3'- caGCUUGCgCUGGUACGCCc--GGaaua -5'
26266 5' -55.6 NC_005345.2 + 2036 0.82 0.065938
Target:  5'- cGUCGAgcgggcccgGCGCGGCCcgGCGGGCCg--- -3'
miRNA:   3'- -CAGCU---------UGCGCUGGuaCGCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 2371 0.69 0.477017
Target:  5'- -cCGGuCGCGACCucGCGGGCCc--- -3'
miRNA:   3'- caGCUuGCGCUGGuaCGCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 2445 0.69 0.436691
Target:  5'- cUCGAACGCGuCCcgGUGuaGGCCUg-- -3'
miRNA:   3'- cAGCUUGCGCuGGuaCGC--CCGGAaua -5'
26266 5' -55.6 NC_005345.2 + 3425 0.69 0.446591
Target:  5'- -gCGGGCGCGGCgGcgggcggcgaUGCGGGCCc--- -3'
miRNA:   3'- caGCUUGCGCUGgU----------ACGCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 4282 0.66 0.629335
Target:  5'- cUCGcGACGCGGCCGccGCGGGgCg--- -3'
miRNA:   3'- cAGC-UUGCGCUGGUa-CGCCCgGaaua -5'
26266 5' -55.6 NC_005345.2 + 11266 0.68 0.487386
Target:  5'- -aCGGGCaccgccGCGACCGUcCGGGCCUg-- -3'
miRNA:   3'- caGCUUG------CGCUGGUAcGCCCGGAaua -5'
26266 5' -55.6 NC_005345.2 + 11378 0.68 0.529856
Target:  5'- -cCGGuCGCGGCCGccUGCGGGCg---- -3'
miRNA:   3'- caGCUuGCGCUGGU--ACGCCCGgaaua -5'
26266 5' -55.6 NC_005345.2 + 11705 0.69 0.426918
Target:  5'- aUCGAcgGC-CGACCA-GCGGGCCg--- -3'
miRNA:   3'- cAGCU--UGcGCUGGUaCGCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 13774 0.66 0.629335
Target:  5'- -aUGAGCGCG-CCGaacGCGGGCUUg-- -3'
miRNA:   3'- caGCUUGCGCuGGUa--CGCCCGGAaua -5'
26266 5' -55.6 NC_005345.2 + 15706 0.66 0.640528
Target:  5'- --aGGugGUGACaCAccuUGCGGGCCg--- -3'
miRNA:   3'- cagCUugCGCUG-GU---ACGCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 15893 0.66 0.651712
Target:  5'- uUCcGGCGUG-CCAUGcCGGGCCgUGUg -3'
miRNA:   3'- cAGcUUGCGCuGGUAC-GCCCGGaAUA- -5'
26266 5' -55.6 NC_005345.2 + 18042 0.66 0.618145
Target:  5'- --gGAACGCGGCCAcguugcgGCGGGUg---- -3'
miRNA:   3'- cagCUUGCGCUGGUa------CGCCCGgaaua -5'
26266 5' -55.6 NC_005345.2 + 18146 0.69 0.466758
Target:  5'- gGUCGGcACGUaggccgGACCggGCGGGCCg--- -3'
miRNA:   3'- -CAGCU-UGCG------CUGGuaCGCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 18209 0.69 0.446591
Target:  5'- -cCGGuCGCGGCCGUgcaccgugaGCGGGCCg--- -3'
miRNA:   3'- caGCUuGCGCUGGUA---------CGCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 18801 0.66 0.640528
Target:  5'- cGUCGGGCaggGUGACgGcggcGCGGGCCUg-- -3'
miRNA:   3'- -CAGCUUG---CGCUGgUa---CGCCCGGAaua -5'
26266 5' -55.6 NC_005345.2 + 19078 0.79 0.108117
Target:  5'- gGUCu-ACGCGAUCGUGCGGGCCg--- -3'
miRNA:   3'- -CAGcuUGCGCUGGUACGCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 19997 0.66 0.606968
Target:  5'- -cCGAGgGCGACag-GCGGGCUg--- -3'
miRNA:   3'- caGCUUgCGCUGguaCGCCCGGaaua -5'
26266 5' -55.6 NC_005345.2 + 21837 0.68 0.529856
Target:  5'- aUCGAcugcuGCGCGGCaugCGUGCGGGCg---- -3'
miRNA:   3'- cAGCU-----UGCGCUG---GUACGCCCGgaaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.