Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26266 | 5' | -55.6 | NC_005345.2 | + | 2036 | 0.82 | 0.065938 |
Target: 5'- cGUCGAgcgggcccgGCGCGGCCcgGCGGGCCg--- -3' miRNA: 3'- -CAGCU---------UGCGCUGGuaCGCCCGGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 654 | 0.66 | 0.606968 |
Target: 5'- -gUGAGCGgGACCGUGCGGaacCCg--- -3' miRNA: 3'- caGCUUGCgCUGGUACGCCc--GGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 11378 | 0.68 | 0.529856 |
Target: 5'- -cCGGuCGCGGCCGccUGCGGGCg---- -3' miRNA: 3'- caGCUuGCGCUGGU--ACGCCCGgaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 24748 | 0.69 | 0.446591 |
Target: 5'- cGUCGGACGCGuggcugucgcaGCCcgaaGUGCGGGCg---- -3' miRNA: 3'- -CAGCUUGCGC-----------UGG----UACGCCCGgaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 23672 | 0.69 | 0.436691 |
Target: 5'- --aGGGuCGCGGCCGgucggGCGGGCCg--- -3' miRNA: 3'- cagCUU-GCGCUGGUa----CGCCCGGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 11705 | 0.69 | 0.426918 |
Target: 5'- aUCGAcgGC-CGACCA-GCGGGCCg--- -3' miRNA: 3'- cAGCU--UGcGCUGGUaCGCCCGGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 34776 | 0.66 | 0.662879 |
Target: 5'- -gCGGcuACGCGAUCGUGCagGGGCUg--- -3' miRNA: 3'- caGCU--UGCGCUGGUACG--CCCGGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 15706 | 0.66 | 0.640528 |
Target: 5'- --aGGugGUGACaCAccuUGCGGGCCg--- -3' miRNA: 3'- cagCUugCGCUG-GU---ACGCCCGGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 37856 | 0.66 | 0.618145 |
Target: 5'- gGUCGGuCGCGGCCG-GCGaGGCUc--- -3' miRNA: 3'- -CAGCUuGCGCUGGUaCGC-CCGGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 28937 | 0.67 | 0.595813 |
Target: 5'- aUCGA--GCGACgCAgcUGaCGGGCCUUAUc -3' miRNA: 3'- cAGCUugCGCUG-GU--AC-GCCCGGAAUA- -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 515 | 0.69 | 0.436691 |
Target: 5'- gGUCaGGACGCcGCCcUGUGGGCCg--- -3' miRNA: 3'- -CAG-CUUGCGcUGGuACGCCCGGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 19078 | 0.79 | 0.108117 |
Target: 5'- gGUCu-ACGCGAUCGUGCGGGCCg--- -3' miRNA: 3'- -CAGcuUGCGCUGGUACGCCCGGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 46394 | 0.66 | 0.618145 |
Target: 5'- -cCGcGCGUGGCgcgcuccaCAUGCGGGCCg--- -3' miRNA: 3'- caGCuUGCGCUG--------GUACGCCCGGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 24616 | 0.74 | 0.240939 |
Target: 5'- -aCGggUGCGugcugcacgauccGCCGUGCGGGCCg--- -3' miRNA: 3'- caGCuuGCGC-------------UGGUACGCCCGGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 24695 | 0.67 | 0.5516 |
Target: 5'- cUCGAACGauccgcaaGAUC-UGCGGGCCg--- -3' miRNA: 3'- cAGCUUGCg-------CUGGuACGCCCGGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 4282 | 0.66 | 0.629335 |
Target: 5'- cUCGcGACGCGGCCGccGCGGGgCg--- -3' miRNA: 3'- cAGC-UUGCGCUGGUa-CGCCCgGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 29317 | 0.73 | 0.254621 |
Target: 5'- -gUGAACGCGACCGUGCcGGUCa--- -3' miRNA: 3'- caGCUUGCGCUGGUACGcCCGGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 19997 | 0.66 | 0.606968 |
Target: 5'- -cCGAGgGCGACag-GCGGGCUg--- -3' miRNA: 3'- caGCUUgCGCUGguaCGCCCGGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 2371 | 0.69 | 0.477017 |
Target: 5'- -cCGGuCGCGACCucGCGGGCCc--- -3' miRNA: 3'- caGCUuGCGCUGGuaCGCCCGGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 11266 | 0.68 | 0.487386 |
Target: 5'- -aCGGGCaccgccGCGACCGUcCGGGCCUg-- -3' miRNA: 3'- caGCUUG------CGCUGGUAcGCCCGGAaua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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