miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26267 5' -57.2 NC_005345.2 + 41201 1.11 0.000466
Target:  5'- gGCAUGUGCGCGAGCGACCCGAUCCGGu -3'
miRNA:   3'- -CGUACACGCGCUCGCUGGGCUAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 32497 0.76 0.160126
Target:  5'- cGCuccgGUGCcgucccucugccgGCGGGCGGCCCGAucugcgcgggUCCGGg -3'
miRNA:   3'- -CGua--CACG-------------CGCUCGCUGGGCU----------AGGCC- -5'
26267 5' -57.2 NC_005345.2 + 35991 0.75 0.178662
Target:  5'- cGCAUGUGgGagacGGCGACCaaguCGGUCCGGg -3'
miRNA:   3'- -CGUACACgCgc--UCGCUGG----GCUAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 47805 0.75 0.198556
Target:  5'- uCGUGgcagGCGCGuuaccGCGACCCGG-CCGGc -3'
miRNA:   3'- cGUACa---CGCGCu----CGCUGGGCUaGGCC- -5'
26267 5' -57.2 NC_005345.2 + 14346 0.74 0.20921
Target:  5'- cGCAcggcGUGCGCGAG-GACCgCGAcCCGGc -3'
miRNA:   3'- -CGUa---CACGCGCUCgCUGG-GCUaGGCC- -5'
26267 5' -57.2 NC_005345.2 + 27149 0.74 0.214719
Target:  5'- gGCAUGccgccGUGCGgcAGCGGCCCGAgcaguaCCGGg -3'
miRNA:   3'- -CGUACa----CGCGC--UCGCUGGGCUa-----GGCC- -5'
26267 5' -57.2 NC_005345.2 + 43474 0.74 0.220353
Target:  5'- cGCGgcgcaGCGCGGuCGGCUCGGUCCGGg -3'
miRNA:   3'- -CGUaca--CGCGCUcGCUGGGCUAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 16908 0.74 0.226112
Target:  5'- ---cGUGCGCGuGGUGAcCCCGGUCgCGGu -3'
miRNA:   3'- cguaCACGCGC-UCGCU-GGGCUAG-GCC- -5'
26267 5' -57.2 NC_005345.2 + 1173 0.73 0.256843
Target:  5'- aGCGUGcgcgGCGCacacGGGCGGCUCGGcagUCCGGc -3'
miRNA:   3'- -CGUACa---CGCG----CUCGCUGGGCU---AGGCC- -5'
26267 5' -57.2 NC_005345.2 + 31199 0.72 0.29091
Target:  5'- gGCggGUGCgGCGGGUGcgcACCCGGgugcggCCGGg -3'
miRNA:   3'- -CGuaCACG-CGCUCGC---UGGGCUa-----GGCC- -5'
26267 5' -57.2 NC_005345.2 + 21566 0.71 0.328416
Target:  5'- cGCAcguUG-GCGCGAGaCGGCCCGA--CGGc -3'
miRNA:   3'- -CGU---ACaCGCGCUC-GCUGGGCUagGCC- -5'
26267 5' -57.2 NC_005345.2 + 34532 0.71 0.328416
Target:  5'- cGCGgccuCGCGGGCGuACCCGucgAUCCGGa -3'
miRNA:   3'- -CGUacacGCGCUCGC-UGGGC---UAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 35836 0.7 0.369378
Target:  5'- gGCGaggGcGCgGCGGGUGGCUCGGUUCGGg -3'
miRNA:   3'- -CGUa--CaCG-CGCUCGCUGGGCUAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 39234 0.7 0.386714
Target:  5'- cCGUGUG-GCGGGuCGGCCCGGaCgGGa -3'
miRNA:   3'- cGUACACgCGCUC-GCUGGGCUaGgCC- -5'
26267 5' -57.2 NC_005345.2 + 26629 0.7 0.395581
Target:  5'- cCGUGUcggGCGCccggccGGGCGACCCGuGUCgGGg -3'
miRNA:   3'- cGUACA---CGCG------CUCGCUGGGC-UAGgCC- -5'
26267 5' -57.2 NC_005345.2 + 9350 0.7 0.395581
Target:  5'- cGCAUGgugGCuGCGGGCGGCCgGGcUCGa -3'
miRNA:   3'- -CGUACa--CG-CGCUCGCUGGgCUaGGCc -5'
26267 5' -57.2 NC_005345.2 + 4395 0.7 0.395581
Target:  5'- cGCAUGaGCGCGAuCGACaaGGcCCGGa -3'
miRNA:   3'- -CGUACaCGCGCUcGCUGggCUaGGCC- -5'
26267 5' -57.2 NC_005345.2 + 2755 0.7 0.404578
Target:  5'- cGCAUGUggagcgcgccacGCGCG-GCGGCCuCGGUaCGGc -3'
miRNA:   3'- -CGUACA------------CGCGCuCGCUGG-GCUAgGCC- -5'
26267 5' -57.2 NC_005345.2 + 8695 0.69 0.422954
Target:  5'- ---cGUGaCGUGGGCGGCCCGGcuguggCCGa -3'
miRNA:   3'- cguaCAC-GCGCUCGCUGGGCUa-----GGCc -5'
26267 5' -57.2 NC_005345.2 + 21851 0.69 0.422954
Target:  5'- gGCAUGcGUGCGGGCGAgCUGcaggUCGGu -3'
miRNA:   3'- -CGUACaCGCGCUCGCUgGGCua--GGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.