miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26267 5' -57.2 NC_005345.2 + 32497 0.76 0.160126
Target:  5'- cGCuccgGUGCcgucccucugccgGCGGGCGGCCCGAucugcgcgggUCCGGg -3'
miRNA:   3'- -CGua--CACG-------------CGCUCGCUGGGCU----------AGGCC- -5'
26267 5' -57.2 NC_005345.2 + 47943 0.68 0.521646
Target:  5'- -----cGCGCGGcGUGGCCCGcgggCCGGa -3'
miRNA:   3'- cguacaCGCGCU-CGCUGGGCua--GGCC- -5'
26267 5' -57.2 NC_005345.2 + 9510 0.66 0.595702
Target:  5'- cGCGggcccUGUGCGCGcAGacCGACCCGGagcuguuccacCCGGa -3'
miRNA:   3'- -CGU-----ACACGCGC-UC--GCUGGGCUa----------GGCC- -5'
26267 5' -57.2 NC_005345.2 + 43939 0.66 0.638836
Target:  5'- gGCGUGUaGCGcCGGGCcggccGugCCGAUgcgugcagcCCGGc -3'
miRNA:   3'- -CGUACA-CGC-GCUCG-----CugGGCUA---------GGCC- -5'
26267 5' -57.2 NC_005345.2 + 39234 0.7 0.386714
Target:  5'- cCGUGUG-GCGGGuCGGCCCGGaCgGGa -3'
miRNA:   3'- cGUACACgCGCUC-GCUGGGCUaGgCC- -5'
26267 5' -57.2 NC_005345.2 + 4395 0.7 0.395581
Target:  5'- cGCAUGaGCGCGAuCGACaaGGcCCGGa -3'
miRNA:   3'- -CGUACaCGCGCUcGCUGggCUaGGCC- -5'
26267 5' -57.2 NC_005345.2 + 8695 0.69 0.422954
Target:  5'- ---cGUGaCGUGGGCGGCCCGGcuguggCCGa -3'
miRNA:   3'- cguaCAC-GCGCUCGCUGGGCUa-----GGCc -5'
26267 5' -57.2 NC_005345.2 + 14814 0.69 0.451433
Target:  5'- aGCGgcggGCGCGGGUGuggucgacGCCCGAgcagcuugCCGGg -3'
miRNA:   3'- -CGUaca-CGCGCUCGC--------UGGGCUa-------GGCC- -5'
26267 5' -57.2 NC_005345.2 + 45689 0.68 0.48093
Target:  5'- gGCAUGUccgacagcccGCGCGAGCucggGGCCCGcaucgCCGc -3'
miRNA:   3'- -CGUACA----------CGCGCUCG----CUGGGCua---GGCc -5'
26267 5' -57.2 NC_005345.2 + 24798 0.68 0.521646
Target:  5'- gGCAaggugGUGCaGcCGGGCGACCgGAUCgugcuCGGg -3'
miRNA:   3'- -CGUa----CACG-C-GCUCGCUGGgCUAG-----GCC- -5'
26267 5' -57.2 NC_005345.2 + 10299 0.68 0.501106
Target:  5'- cGCggGcUGUGgGAGCGGCCCGGcacgagcguguUCgCGGu -3'
miRNA:   3'- -CGuaC-ACGCgCUCGCUGGGCU-----------AG-GCC- -5'
26267 5' -57.2 NC_005345.2 + 37095 0.69 0.461157
Target:  5'- -----aGCGCGGGCugaaccagGACgCGAUCCGGc -3'
miRNA:   3'- cguacaCGCGCUCG--------CUGgGCUAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 35991 0.75 0.178662
Target:  5'- cGCAUGUGgGagacGGCGACCaaguCGGUCCGGg -3'
miRNA:   3'- -CGUACACgCgc--UCGCUGG----GCUAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 13025 0.68 0.501106
Target:  5'- -gGUGUGCccacuGCG-GCGACCgGAUcaCCGGc -3'
miRNA:   3'- cgUACACG-----CGCuCGCUGGgCUA--GGCC- -5'
26267 5' -57.2 NC_005345.2 + 14346 0.74 0.20921
Target:  5'- cGCAcggcGUGCGCGAG-GACCgCGAcCCGGc -3'
miRNA:   3'- -CGUa---CACGCGCUCgCUGG-GCUaGGCC- -5'
26267 5' -57.2 NC_005345.2 + 48423 0.69 0.46018
Target:  5'- gGCAcGUcgacgGCGUGGGCGaucuggagcaagaGCCCGAggCCGGg -3'
miRNA:   3'- -CGUaCA-----CGCGCUCGC-------------UGGGCUa-GGCC- -5'
26267 5' -57.2 NC_005345.2 + 5139 0.68 0.520611
Target:  5'- gGCAUGaGCGCcgacaccgugcacGAGCGACUCGucgCCGc -3'
miRNA:   3'- -CGUACaCGCG-------------CUCGCUGGGCua-GGCc -5'
26267 5' -57.2 NC_005345.2 + 30965 0.67 0.557269
Target:  5'- uGCAuUGgaacgGCGCGcgguucgaggugaucGGCccGCCCGGUCCGGc -3'
miRNA:   3'- -CGU-ACa----CGCGC---------------UCGc-UGGGCUAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 21566 0.71 0.328416
Target:  5'- cGCAcguUG-GCGCGAGaCGGCCCGA--CGGc -3'
miRNA:   3'- -CGU---ACaCGCGCUC-GCUGGGCUagGCC- -5'
26267 5' -57.2 NC_005345.2 + 9350 0.7 0.395581
Target:  5'- cGCAUGgugGCuGCGGGCGGCCgGGcUCGa -3'
miRNA:   3'- -CGUACa--CG-CGCUCGCUGGgCUaGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.