miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26267 5' -57.2 NC_005345.2 + 5775 0.66 0.638836
Target:  5'- cGCAgGUGCuCG-GCGugCCGuacCCGGc -3'
miRNA:   3'- -CGUaCACGcGCuCGCugGGCua-GGCC- -5'
26267 5' -57.2 NC_005345.2 + 9510 0.66 0.595702
Target:  5'- cGCGggcccUGUGCGCGcAGacCGACCCGGagcuguuccacCCGGa -3'
miRNA:   3'- -CGU-----ACACGCGC-UC--GCUGGGCUa----------GGCC- -5'
26267 5' -57.2 NC_005345.2 + 45689 0.68 0.48093
Target:  5'- gGCAUGUccgacagcccGCGCGAGCucggGGCCCGcaucgCCGc -3'
miRNA:   3'- -CGUACA----------CGCGCUCG----CUGGGCua---GGCc -5'
26267 5' -57.2 NC_005345.2 + 28121 0.66 0.606463
Target:  5'- cGCGcGUGC-CGAGgaaCGcACCCGggCCGGc -3'
miRNA:   3'- -CGUaCACGcGCUC---GC-UGGGCuaGGCC- -5'
26267 5' -57.2 NC_005345.2 + 43939 0.66 0.638836
Target:  5'- gGCGUGUaGCGcCGGGCcggccGugCCGAUgcgugcagcCCGGc -3'
miRNA:   3'- -CGUACA-CGC-GCUCG-----CugGGCUA---------GGCC- -5'
26267 5' -57.2 NC_005345.2 + 11492 0.66 0.628038
Target:  5'- -----cGCGCaGGCGGCCCGcaccgacgCCGGa -3'
miRNA:   3'- cguacaCGCGcUCGCUGGGCua------GGCC- -5'
26267 5' -57.2 NC_005345.2 + 37095 0.69 0.461157
Target:  5'- -----aGCGCGGGCugaaccagGACgCGAUCCGGc -3'
miRNA:   3'- cguacaCGCGCUCG--------CUGgGCUAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 48423 0.69 0.46018
Target:  5'- gGCAcGUcgacgGCGUGGGCGaucuggagcaagaGCCCGAggCCGGg -3'
miRNA:   3'- -CGUaCA-----CGCGCUCGC-------------UGGGCUa-GGCC- -5'
26267 5' -57.2 NC_005345.2 + 25263 0.66 0.605386
Target:  5'- gGCAccUGCucaacucccgucgGCGuaaGACCCGGUCCGGg -3'
miRNA:   3'- -CGUacACG-------------CGCucgCUGGGCUAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 6561 0.67 0.563632
Target:  5'- aCGUGgcuaCGCGGGCgGACCCGugaCGGg -3'
miRNA:   3'- cGUACac--GCGCUCG-CUGGGCuagGCC- -5'
26267 5' -57.2 NC_005345.2 + 27149 0.74 0.214719
Target:  5'- gGCAUGccgccGUGCGgcAGCGGCCCGAgcaguaCCGGg -3'
miRNA:   3'- -CGUACa----CGCGC--UCGCUGGGCUa-----GGCC- -5'
26267 5' -57.2 NC_005345.2 + 33429 0.68 0.511334
Target:  5'- aGCAggGUG-GCGGGCGGCCCGcaa-GGu -3'
miRNA:   3'- -CGUa-CACgCGCUCGCUGGGCuaggCC- -5'
26267 5' -57.2 NC_005345.2 + 8716 0.68 0.521646
Target:  5'- ---cGUGCGCGGGcCGAUcgCCGcgUCGGu -3'
miRNA:   3'- cguaCACGCGCUC-GCUG--GGCuaGGCC- -5'
26267 5' -57.2 NC_005345.2 + 15858 0.68 0.525794
Target:  5'- cGCG-GUGgGCGAGCaGCUCGGcgcuugugaucuucuUCCGGc -3'
miRNA:   3'- -CGUaCACgCGCUCGcUGGGCU---------------AGGCC- -5'
26267 5' -57.2 NC_005345.2 + 35836 0.7 0.369378
Target:  5'- gGCGaggGcGCgGCGGGUGGCUCGGUUCGGg -3'
miRNA:   3'- -CGUa--CaCG-CGCUCGCUGGGCUAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 34532 0.71 0.328416
Target:  5'- cGCGgccuCGCGGGCGuACCCGucgAUCCGGa -3'
miRNA:   3'- -CGUacacGCGCUCGC-UGGGC---UAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 31199 0.72 0.29091
Target:  5'- gGCggGUGCgGCGGGUGcgcACCCGGgugcggCCGGg -3'
miRNA:   3'- -CGuaCACG-CGCUCGC---UGGGCUa-----GGCC- -5'
26267 5' -57.2 NC_005345.2 + 1173 0.73 0.256843
Target:  5'- aGCGUGcgcgGCGCacacGGGCGGCUCGGcagUCCGGc -3'
miRNA:   3'- -CGUACa---CGCG----CUCGCUGGGCU---AGGCC- -5'
26267 5' -57.2 NC_005345.2 + 16908 0.74 0.226112
Target:  5'- ---cGUGCGCGuGGUGAcCCCGGUCgCGGu -3'
miRNA:   3'- cguaCACGCGC-UCGCU-GGGCUAG-GCC- -5'
26267 5' -57.2 NC_005345.2 + 43474 0.74 0.220353
Target:  5'- cGCGgcgcaGCGCGGuCGGCUCGGUCCGGg -3'
miRNA:   3'- -CGUaca--CGCGCUcGCUGGGCUAGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.