miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26267 5' -57.2 NC_005345.2 + 16908 0.74 0.226112
Target:  5'- ---cGUGCGCGuGGUGAcCCCGGUCgCGGu -3'
miRNA:   3'- cguaCACGCGC-UCGCU-GGGCUAG-GCC- -5'
26267 5' -57.2 NC_005345.2 + 18687 0.68 0.470991
Target:  5'- cGCAgaucGCGCGcAGCGuGCCCgGAUCgGGg -3'
miRNA:   3'- -CGUaca-CGCGC-UCGC-UGGG-CUAGgCC- -5'
26267 5' -57.2 NC_005345.2 + 19120 0.69 0.432328
Target:  5'- cGCGUGgGCGcCGAuccgcucgGCGACCuCGG-CCGGg -3'
miRNA:   3'- -CGUACaCGC-GCU--------CGCUGG-GCUaGGCC- -5'
26267 5' -57.2 NC_005345.2 + 21566 0.71 0.328416
Target:  5'- cGCAcguUG-GCGCGAGaCGGCCCGA--CGGc -3'
miRNA:   3'- -CGU---ACaCGCGCUC-GCUGGGCUagGCC- -5'
26267 5' -57.2 NC_005345.2 + 21763 0.66 0.606463
Target:  5'- --cUGUGCugcucgcugGCGGGCGAgCCGGggUCGGg -3'
miRNA:   3'- cguACACG---------CGCUCGCUgGGCUa-GGCC- -5'
26267 5' -57.2 NC_005345.2 + 21851 0.69 0.422954
Target:  5'- gGCAUGcGUGCGGGCGAgCUGcaggUCGGu -3'
miRNA:   3'- -CGUACaCGCGCUCGCUgGGCua--GGCC- -5'
26267 5' -57.2 NC_005345.2 + 22556 0.66 0.638836
Target:  5'- cGCAgcgaGCGCGAGCa--CCGAUUCGa -3'
miRNA:   3'- -CGUaca-CGCGCUCGcugGGCUAGGCc -5'
26267 5' -57.2 NC_005345.2 + 24317 0.69 0.432328
Target:  5'- cGCu--UGCGCGAGCcgucgaACCCGAgcacgaUCCGGu -3'
miRNA:   3'- -CGuacACGCGCUCGc-----UGGGCU------AGGCC- -5'
26267 5' -57.2 NC_005345.2 + 24798 0.68 0.521646
Target:  5'- gGCAaggugGUGCaGcCGGGCGACCgGAUCgugcuCGGg -3'
miRNA:   3'- -CGUa----CACG-C-GCUCGCUGGgCUAG-----GCC- -5'
26267 5' -57.2 NC_005345.2 + 25263 0.66 0.605386
Target:  5'- gGCAccUGCucaacucccgucgGCGuaaGACCCGGUCCGGg -3'
miRNA:   3'- -CGUacACG-------------CGCucgCUGGGCUAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 26629 0.7 0.395581
Target:  5'- cCGUGUcggGCGCccggccGGGCGACCCGuGUCgGGg -3'
miRNA:   3'- cGUACA---CGCG------CUCGCUGGGC-UAGgCC- -5'
26267 5' -57.2 NC_005345.2 + 26801 0.68 0.470991
Target:  5'- cGCccGUGCG-GcAGCGACCCGcgCCc- -3'
miRNA:   3'- -CGuaCACGCgC-UCGCUGGGCuaGGcc -5'
26267 5' -57.2 NC_005345.2 + 27149 0.74 0.214719
Target:  5'- gGCAUGccgccGUGCGgcAGCGGCCCGAgcaguaCCGGg -3'
miRNA:   3'- -CGUACa----CGCGC--UCGCUGGGCUa-----GGCC- -5'
26267 5' -57.2 NC_005345.2 + 28121 0.66 0.606463
Target:  5'- cGCGcGUGC-CGAGgaaCGcACCCGggCCGGc -3'
miRNA:   3'- -CGUaCACGcGCUC---GC-UGGGCuaGGCC- -5'
26267 5' -57.2 NC_005345.2 + 30424 0.68 0.487948
Target:  5'- uCAUG-GCGCGccacaucccgaccgGGCacaccCCCGAUCCGGg -3'
miRNA:   3'- cGUACaCGCGC--------------UCGcu---GGGCUAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 30965 0.67 0.557269
Target:  5'- uGCAuUGgaacgGCGCGcgguucgaggugaucGGCccGCCCGGUCCGGc -3'
miRNA:   3'- -CGU-ACa----CGCGC---------------UCGc-UGGGCUAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 31199 0.72 0.29091
Target:  5'- gGCggGUGCgGCGGGUGcgcACCCGGgugcggCCGGg -3'
miRNA:   3'- -CGuaCACG-CGCUCGC---UGGGCUa-----GGCC- -5'
26267 5' -57.2 NC_005345.2 + 32497 0.76 0.160126
Target:  5'- cGCuccgGUGCcgucccucugccgGCGGGCGGCCCGAucugcgcgggUCCGGg -3'
miRNA:   3'- -CGua--CACG-------------CGCUCGCUGGGCU----------AGGCC- -5'
26267 5' -57.2 NC_005345.2 + 33429 0.68 0.511334
Target:  5'- aGCAggGUG-GCGGGCGGCCCGcaa-GGu -3'
miRNA:   3'- -CGUa-CACgCGCUCGCUGGGCuaggCC- -5'
26267 5' -57.2 NC_005345.2 + 34149 0.67 0.563632
Target:  5'- -aGUG-GCGCGgcGGCGGcCCCGAggaguggcCCGGg -3'
miRNA:   3'- cgUACaCGCGC--UCGCU-GGGCUa-------GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.