miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26267 5' -57.2 NC_005345.2 + 1173 0.73 0.256843
Target:  5'- aGCGUGcgcgGCGCacacGGGCGGCUCGGcagUCCGGc -3'
miRNA:   3'- -CGUACa---CGCG----CUCGCUGGGCU---AGGCC- -5'
26267 5' -57.2 NC_005345.2 + 1478 0.66 0.638836
Target:  5'- cCGUGaUGCG-GAGCGGCCCGcggUGGa -3'
miRNA:   3'- cGUAC-ACGCgCUCGCUGGGCuagGCC- -5'
26267 5' -57.2 NC_005345.2 + 2755 0.7 0.404578
Target:  5'- cGCAUGUggagcgcgccacGCGCG-GCGGCCuCGGUaCGGc -3'
miRNA:   3'- -CGUACA------------CGCGCuCGCUGG-GCUAgGCC- -5'
26267 5' -57.2 NC_005345.2 + 4395 0.7 0.395581
Target:  5'- cGCAUGaGCGCGAuCGACaaGGcCCGGa -3'
miRNA:   3'- -CGUACaCGCGCUcGCUGggCUaGGCC- -5'
26267 5' -57.2 NC_005345.2 + 5139 0.68 0.520611
Target:  5'- gGCAUGaGCGCcgacaccgugcacGAGCGACUCGucgCCGc -3'
miRNA:   3'- -CGUACaCGCG-------------CUCGCUGGGCua-GGCc -5'
26267 5' -57.2 NC_005345.2 + 5775 0.66 0.638836
Target:  5'- cGCAgGUGCuCG-GCGugCCGuacCCGGc -3'
miRNA:   3'- -CGUaCACGcGCuCGCugGGCua-GGCC- -5'
26267 5' -57.2 NC_005345.2 + 6194 0.68 0.470991
Target:  5'- ---cGUGCGCGuGCcGCCCGGcCCGu -3'
miRNA:   3'- cguaCACGCGCuCGcUGGGCUaGGCc -5'
26267 5' -57.2 NC_005345.2 + 6561 0.67 0.563632
Target:  5'- aCGUGgcuaCGCGGGCgGACCCGugaCGGg -3'
miRNA:   3'- cGUACac--GCGCUCG-CUGGGCuagGCC- -5'
26267 5' -57.2 NC_005345.2 + 7031 0.66 0.606463
Target:  5'- cGCcgGUcgaccggccgGCGauCGAgGCGGCCCGG-CCGGa -3'
miRNA:   3'- -CGuaCA----------CGC--GCU-CGCUGGGCUaGGCC- -5'
26267 5' -57.2 NC_005345.2 + 8695 0.69 0.422954
Target:  5'- ---cGUGaCGUGGGCGGCCCGGcuguggCCGa -3'
miRNA:   3'- cguaCAC-GCGCUCGCUGGGCUa-----GGCc -5'
26267 5' -57.2 NC_005345.2 + 8716 0.68 0.521646
Target:  5'- ---cGUGCGCGGGcCGAUcgCCGcgUCGGu -3'
miRNA:   3'- cguaCACGCGCUC-GCUG--GGCuaGGCC- -5'
26267 5' -57.2 NC_005345.2 + 9018 0.67 0.542505
Target:  5'- cUcgGUGCGCGGGaucaGAgCCGggUCGGc -3'
miRNA:   3'- cGuaCACGCGCUCg---CUgGGCuaGGCC- -5'
26267 5' -57.2 NC_005345.2 + 9350 0.7 0.395581
Target:  5'- cGCAUGgugGCuGCGGGCGGCCgGGcUCGa -3'
miRNA:   3'- -CGUACa--CG-CGCUCGCUGGgCUaGGCc -5'
26267 5' -57.2 NC_005345.2 + 9510 0.66 0.595702
Target:  5'- cGCGggcccUGUGCGCGcAGacCGACCCGGagcuguuccacCCGGa -3'
miRNA:   3'- -CGU-----ACACGCGC-UC--GCUGGGCUa----------GGCC- -5'
26267 5' -57.2 NC_005345.2 + 10299 0.68 0.501106
Target:  5'- cGCggGcUGUGgGAGCGGCCCGGcacgagcguguUCgCGGu -3'
miRNA:   3'- -CGuaC-ACGCgCUCGCUGGGCU-----------AG-GCC- -5'
26267 5' -57.2 NC_005345.2 + 11492 0.66 0.628038
Target:  5'- -----cGCGCaGGCGGCCCGcaccgacgCCGGa -3'
miRNA:   3'- cguacaCGCGcUCGCUGGGCua------GGCC- -5'
26267 5' -57.2 NC_005345.2 + 13025 0.68 0.501106
Target:  5'- -gGUGUGCccacuGCG-GCGACCgGAUcaCCGGc -3'
miRNA:   3'- cgUACACG-----CGCuCGCUGGgCUA--GGCC- -5'
26267 5' -57.2 NC_005345.2 + 14346 0.74 0.20921
Target:  5'- cGCAcggcGUGCGCGAG-GACCgCGAcCCGGc -3'
miRNA:   3'- -CGUa---CACGCGCUCgCUGG-GCUaGGCC- -5'
26267 5' -57.2 NC_005345.2 + 14814 0.69 0.451433
Target:  5'- aGCGgcggGCGCGGGUGuggucgacGCCCGAgcagcuugCCGGg -3'
miRNA:   3'- -CGUaca-CGCGCUCGC--------UGGGCUa-------GGCC- -5'
26267 5' -57.2 NC_005345.2 + 15858 0.68 0.525794
Target:  5'- cGCG-GUGgGCGAGCaGCUCGGcgcuugugaucuucuUCCGGc -3'
miRNA:   3'- -CGUaCACgCGCUCGcUGGGCU---------------AGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.