miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26267 5' -57.2 NC_005345.2 + 48423 0.69 0.46018
Target:  5'- gGCAcGUcgacgGCGUGGGCGaucuggagcaagaGCCCGAggCCGGg -3'
miRNA:   3'- -CGUaCA-----CGCGCUCGC-------------UGGGCUa-GGCC- -5'
26267 5' -57.2 NC_005345.2 + 47943 0.68 0.521646
Target:  5'- -----cGCGCGGcGUGGCCCGcgggCCGGa -3'
miRNA:   3'- cguacaCGCGCU-CGCUGGGCua--GGCC- -5'
26267 5' -57.2 NC_005345.2 + 47805 0.75 0.198556
Target:  5'- uCGUGgcagGCGCGuuaccGCGACCCGG-CCGGc -3'
miRNA:   3'- cGUACa---CGCGCu----CGCUGGGCUaGGCC- -5'
26267 5' -57.2 NC_005345.2 + 47368 0.66 0.620482
Target:  5'- -gGUGUG-GCGAGUgcugccuGACCCcgcgcguaagccgccGAUCCGGu -3'
miRNA:   3'- cgUACACgCGCUCG-------CUGGG---------------CUAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 46087 0.67 0.532039
Target:  5'- cGCcgGggccUGCGCGgacauccacgcGGCGACCCuGUCgGGg -3'
miRNA:   3'- -CGuaC----ACGCGC-----------UCGCUGGGcUAGgCC- -5'
26267 5' -57.2 NC_005345.2 + 45689 0.68 0.48093
Target:  5'- gGCAUGUccgacagcccGCGCGAGCucggGGCCCGcaucgCCGc -3'
miRNA:   3'- -CGUACA----------CGCGCUCG----CUGGGCua---GGCc -5'
26267 5' -57.2 NC_005345.2 + 43939 0.66 0.638836
Target:  5'- gGCGUGUaGCGcCGGGCcggccGugCCGAUgcgugcagcCCGGc -3'
miRNA:   3'- -CGUACA-CGC-GCUCG-----CugGGCUA---------GGCC- -5'
26267 5' -57.2 NC_005345.2 + 43937 0.67 0.553039
Target:  5'- gGCcgGc-CGCGAGCuGCCCGGccgugCCGGg -3'
miRNA:   3'- -CGuaCacGCGCUCGcUGGGCUa----GGCC- -5'
26267 5' -57.2 NC_005345.2 + 43474 0.74 0.220353
Target:  5'- cGCGgcgcaGCGCGGuCGGCUCGGUCCGGg -3'
miRNA:   3'- -CGUaca--CGCGCUcGCUGGGCUAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 41878 0.66 0.606463
Target:  5'- gGCGaucGCGCGGGCGGCgacgcuugUCGGUUCGGc -3'
miRNA:   3'- -CGUacaCGCGCUCGCUG--------GGCUAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 41400 0.66 0.638836
Target:  5'- ---cGUGCaGCG-GCGugCCGucgagCCGGu -3'
miRNA:   3'- cguaCACG-CGCuCGCugGGCua---GGCC- -5'
26267 5' -57.2 NC_005345.2 + 41201 1.11 0.000466
Target:  5'- gGCAUGUGCGCGAGCGACCCGAUCCGGu -3'
miRNA:   3'- -CGUACACGCGCUCGCUGGGCUAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 40775 0.67 0.553039
Target:  5'- gGCcgGUcggccgGCGCGGGCGugUCGcguUCCGu -3'
miRNA:   3'- -CGuaCA------CGCGCUCGCugGGCu--AGGCc -5'
26267 5' -57.2 NC_005345.2 + 39234 0.7 0.386714
Target:  5'- cCGUGUG-GCGGGuCGGCCCGGaCgGGa -3'
miRNA:   3'- cGUACACgCGCUC-GCUGGGCUaGgCC- -5'
26267 5' -57.2 NC_005345.2 + 39056 0.66 0.586043
Target:  5'- cGCAUGUGcCGCucggcccggaugacGAGCGccucgacggcgucgaACCCGAUCgCGu -3'
miRNA:   3'- -CGUACAC-GCG--------------CUCGC---------------UGGGCUAG-GCc -5'
26267 5' -57.2 NC_005345.2 + 38152 0.67 0.536217
Target:  5'- gGCAUGUggaucuccagguucaGagaGUGAGCuGCCCG-UCCGGg -3'
miRNA:   3'- -CGUACA---------------Cg--CGCUCGcUGGGCuAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 38040 0.67 0.563632
Target:  5'- -gGUGagcUGCGCG-GCGACCCaacuUCCGa -3'
miRNA:   3'- cgUAC---ACGCGCuCGCUGGGcu--AGGCc -5'
26267 5' -57.2 NC_005345.2 + 37095 0.69 0.461157
Target:  5'- -----aGCGCGGGCugaaccagGACgCGAUCCGGc -3'
miRNA:   3'- cguacaCGCGCUCG--------CUGgGCUAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 35991 0.75 0.178662
Target:  5'- cGCAUGUGgGagacGGCGACCaaguCGGUCCGGg -3'
miRNA:   3'- -CGUACACgCgc--UCGCUGG----GCUAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 35836 0.7 0.369378
Target:  5'- gGCGaggGcGCgGCGGGUGGCUCGGUUCGGg -3'
miRNA:   3'- -CGUa--CaCG-CGCUCGCUGGGCUAGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.