miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26267 5' -57.2 NC_005345.2 + 21851 0.69 0.422954
Target:  5'- gGCAUGcGUGCGGGCGAgCUGcaggUCGGu -3'
miRNA:   3'- -CGUACaCGCGCUCGCUgGGCua--GGCC- -5'
26267 5' -57.2 NC_005345.2 + 15858 0.68 0.525794
Target:  5'- cGCG-GUGgGCGAGCaGCUCGGcgcuugugaucuucuUCCGGc -3'
miRNA:   3'- -CGUaCACgCGCUCGcUGGGCU---------------AGGCC- -5'
26267 5' -57.2 NC_005345.2 + 8716 0.68 0.521646
Target:  5'- ---cGUGCGCGGGcCGAUcgCCGcgUCGGu -3'
miRNA:   3'- cguaCACGCGCUC-GCUG--GGCuaGGCC- -5'
26267 5' -57.2 NC_005345.2 + 33429 0.68 0.511334
Target:  5'- aGCAggGUG-GCGGGCGGCCCGcaa-GGu -3'
miRNA:   3'- -CGUa-CACgCGCUCGCUGGGCuaggCC- -5'
26267 5' -57.2 NC_005345.2 + 26801 0.68 0.470991
Target:  5'- cGCccGUGCG-GcAGCGACCCGcgCCc- -3'
miRNA:   3'- -CGuaCACGCgC-UCGCUGGGCuaGGcc -5'
26267 5' -57.2 NC_005345.2 + 18687 0.68 0.470991
Target:  5'- cGCAgaucGCGCGcAGCGuGCCCgGAUCgGGg -3'
miRNA:   3'- -CGUaca-CGCGC-UCGC-UGGG-CUAGgCC- -5'
26267 5' -57.2 NC_005345.2 + 6194 0.68 0.470991
Target:  5'- ---cGUGCGCGuGCcGCCCGGcCCGu -3'
miRNA:   3'- cguaCACGCGCuCGcUGGGCUaGGCc -5'
26267 5' -57.2 NC_005345.2 + 19120 0.69 0.432328
Target:  5'- cGCGUGgGCGcCGAuccgcucgGCGACCuCGG-CCGGg -3'
miRNA:   3'- -CGUACaCGC-GCU--------CGCUGG-GCUaGGCC- -5'
26267 5' -57.2 NC_005345.2 + 24317 0.69 0.432328
Target:  5'- cGCu--UGCGCGAGCcgucgaACCCGAgcacgaUCCGGu -3'
miRNA:   3'- -CGuacACGCGCUCGc-----UGGGCU------AGGCC- -5'
26267 5' -57.2 NC_005345.2 + 46087 0.67 0.532039
Target:  5'- cGCcgGggccUGCGCGgacauccacgcGGCGACCCuGUCgGGg -3'
miRNA:   3'- -CGuaC----ACGCGC-----------UCGCUGGGcUAGgCC- -5'
26267 5' -57.2 NC_005345.2 + 38152 0.67 0.536217
Target:  5'- gGCAUGUggaucuccagguucaGagaGUGAGCuGCCCG-UCCGGg -3'
miRNA:   3'- -CGUACA---------------Cg--CGCUCGcUGGGCuAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 9018 0.67 0.542505
Target:  5'- cUcgGUGCGCGGGaucaGAgCCGggUCGGc -3'
miRNA:   3'- cGuaCACGCGCUCg---CUgGGCuaGGCC- -5'
26267 5' -57.2 NC_005345.2 + 41400 0.66 0.638836
Target:  5'- ---cGUGCaGCG-GCGugCCGucgagCCGGu -3'
miRNA:   3'- cguaCACG-CGCuCGCugGGCua---GGCC- -5'
26267 5' -57.2 NC_005345.2 + 1478 0.66 0.638836
Target:  5'- cCGUGaUGCG-GAGCGGCCCGcggUGGa -3'
miRNA:   3'- cGUAC-ACGCgCUCGCUGGGCuagGCC- -5'
26267 5' -57.2 NC_005345.2 + 39056 0.66 0.586043
Target:  5'- cGCAUGUGcCGCucggcccggaugacGAGCGccucgacggcgucgaACCCGAUCgCGu -3'
miRNA:   3'- -CGUACAC-GCG--------------CUCGC---------------UGGGCUAG-GCc -5'
26267 5' -57.2 NC_005345.2 + 38040 0.67 0.563632
Target:  5'- -gGUGagcUGCGCG-GCGACCCaacuUCCGa -3'
miRNA:   3'- cgUAC---ACGCGCuCGCUGGGcu--AGGCc -5'
26267 5' -57.2 NC_005345.2 + 34149 0.67 0.563632
Target:  5'- -aGUG-GCGCGgcGGCGGcCCCGAggaguggcCCGGg -3'
miRNA:   3'- cgUACaCGCGC--UCGCU-GGGCUa-------GGCC- -5'
26267 5' -57.2 NC_005345.2 + 6561 0.67 0.563632
Target:  5'- aCGUGgcuaCGCGGGCgGACCCGugaCGGg -3'
miRNA:   3'- cGUACac--GCGCUCG-CUGGGCuagGCC- -5'
26267 5' -57.2 NC_005345.2 + 43937 0.67 0.553039
Target:  5'- gGCcgGc-CGCGAGCuGCCCGGccgugCCGGg -3'
miRNA:   3'- -CGuaCacGCGCUCGcUGGGCUa----GGCC- -5'
26267 5' -57.2 NC_005345.2 + 40775 0.67 0.553039
Target:  5'- gGCcgGUcggccgGCGCGGGCGugUCGcguUCCGu -3'
miRNA:   3'- -CGuaCA------CGCGCUCGCugGGCu--AGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.