miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26267 5' -57.2 NC_005345.2 + 9018 0.67 0.542505
Target:  5'- cUcgGUGCGCGGGaucaGAgCCGggUCGGc -3'
miRNA:   3'- cGuaCACGCGCUCg---CUgGGCuaGGCC- -5'
26267 5' -57.2 NC_005345.2 + 38152 0.67 0.536217
Target:  5'- gGCAUGUggaucuccagguucaGagaGUGAGCuGCCCG-UCCGGg -3'
miRNA:   3'- -CGUACA---------------Cg--CGCUCGcUGGGCuAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 46087 0.67 0.532039
Target:  5'- cGCcgGggccUGCGCGgacauccacgcGGCGACCCuGUCgGGg -3'
miRNA:   3'- -CGuaC----ACGCGC-----------UCGCUGGGcUAGgCC- -5'
26267 5' -57.2 NC_005345.2 + 15858 0.68 0.525794
Target:  5'- cGCG-GUGgGCGAGCaGCUCGGcgcuugugaucuucuUCCGGc -3'
miRNA:   3'- -CGUaCACgCGCUCGcUGGGCU---------------AGGCC- -5'
26267 5' -57.2 NC_005345.2 + 47943 0.68 0.521646
Target:  5'- -----cGCGCGGcGUGGCCCGcgggCCGGa -3'
miRNA:   3'- cguacaCGCGCU-CGCUGGGCua--GGCC- -5'
26267 5' -57.2 NC_005345.2 + 8716 0.68 0.521646
Target:  5'- ---cGUGCGCGGGcCGAUcgCCGcgUCGGu -3'
miRNA:   3'- cguaCACGCGCUC-GCUG--GGCuaGGCC- -5'
26267 5' -57.2 NC_005345.2 + 24798 0.68 0.521646
Target:  5'- gGCAaggugGUGCaGcCGGGCGACCgGAUCgugcuCGGg -3'
miRNA:   3'- -CGUa----CACG-C-GCUCGCUGGgCUAG-----GCC- -5'
26267 5' -57.2 NC_005345.2 + 5139 0.68 0.520611
Target:  5'- gGCAUGaGCGCcgacaccgugcacGAGCGACUCGucgCCGc -3'
miRNA:   3'- -CGUACaCGCG-------------CUCGCUGGGCua-GGCc -5'
26267 5' -57.2 NC_005345.2 + 33429 0.68 0.511334
Target:  5'- aGCAggGUG-GCGGGCGGCCCGcaa-GGu -3'
miRNA:   3'- -CGUa-CACgCGCUCGCUGGGCuaggCC- -5'
26267 5' -57.2 NC_005345.2 + 13025 0.68 0.501106
Target:  5'- -gGUGUGCccacuGCG-GCGACCgGAUcaCCGGc -3'
miRNA:   3'- cgUACACG-----CGCuCGCUGGgCUA--GGCC- -5'
26267 5' -57.2 NC_005345.2 + 10299 0.68 0.501106
Target:  5'- cGCggGcUGUGgGAGCGGCCCGGcacgagcguguUCgCGGu -3'
miRNA:   3'- -CGuaC-ACGCgCUCGCUGGGCU-----------AG-GCC- -5'
26267 5' -57.2 NC_005345.2 + 30424 0.68 0.487948
Target:  5'- uCAUG-GCGCGccacaucccgaccgGGCacaccCCCGAUCCGGg -3'
miRNA:   3'- cGUACaCGCGC--------------UCGcu---GGGCUAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 45689 0.68 0.48093
Target:  5'- gGCAUGUccgacagcccGCGCGAGCucggGGCCCGcaucgCCGc -3'
miRNA:   3'- -CGUACA----------CGCGCUCG----CUGGGCua---GGCc -5'
26267 5' -57.2 NC_005345.2 + 18687 0.68 0.470991
Target:  5'- cGCAgaucGCGCGcAGCGuGCCCgGAUCgGGg -3'
miRNA:   3'- -CGUaca-CGCGC-UCGC-UGGG-CUAGgCC- -5'
26267 5' -57.2 NC_005345.2 + 6194 0.68 0.470991
Target:  5'- ---cGUGCGCGuGCcGCCCGGcCCGu -3'
miRNA:   3'- cguaCACGCGCuCGcUGGGCUaGGCc -5'
26267 5' -57.2 NC_005345.2 + 26801 0.68 0.470991
Target:  5'- cGCccGUGCG-GcAGCGACCCGcgCCc- -3'
miRNA:   3'- -CGuaCACGCgC-UCGCUGGGCuaGGcc -5'
26267 5' -57.2 NC_005345.2 + 37095 0.69 0.461157
Target:  5'- -----aGCGCGGGCugaaccagGACgCGAUCCGGc -3'
miRNA:   3'- cguacaCGCGCUCG--------CUGgGCUAGGCC- -5'
26267 5' -57.2 NC_005345.2 + 48423 0.69 0.46018
Target:  5'- gGCAcGUcgacgGCGUGGGCGaucuggagcaagaGCCCGAggCCGGg -3'
miRNA:   3'- -CGUaCA-----CGCGCUCGC-------------UGGGCUa-GGCC- -5'
26267 5' -57.2 NC_005345.2 + 14814 0.69 0.451433
Target:  5'- aGCGgcggGCGCGGGUGuggucgacGCCCGAgcagcuugCCGGg -3'
miRNA:   3'- -CGUaca-CGCGCUCGC--------UGGGCUa-------GGCC- -5'
26267 5' -57.2 NC_005345.2 + 24317 0.69 0.432328
Target:  5'- cGCu--UGCGCGAGCcgucgaACCCGAgcacgaUCCGGu -3'
miRNA:   3'- -CGuacACGCGCUCGc-----UGGGCU------AGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.