miRNA display CGI


Results 1 - 20 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26268 3' -60.8 NC_005345.2 + 48895 0.77 0.064367
Target:  5'- gGCGGCGAGguGCGG-GCGGCGAuGGc- -3'
miRNA:   3'- -CGCCGCUCguCGUCgUGCCGCU-CCau -5'
26268 3' -60.8 NC_005345.2 + 48574 0.67 0.337296
Target:  5'- uGCGGgcgccgaUGAGCucGCGGCG-GGCGAGGa- -3'
miRNA:   3'- -CGCC-------GCUCGu-CGUCGUgCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 48411 0.68 0.285239
Target:  5'- aGCaccGCGAGCGGCAcGUcgACGGCGuGGg- -3'
miRNA:   3'- -CGc--CGCUCGUCGU-CG--UGCCGCuCCau -5'
26268 3' -60.8 NC_005345.2 + 47858 0.67 0.338099
Target:  5'- -aGGUGGGCAugGGCcCGGCGAcGGUGa -3'
miRNA:   3'- cgCCGCUCGUcgUCGuGCCGCU-CCAU- -5'
26268 3' -60.8 NC_005345.2 + 46997 0.74 0.106563
Target:  5'- -aGGUGAGUaucgcccGGCuGCACGGCGAGGc- -3'
miRNA:   3'- cgCCGCUCG-------UCGuCGUGCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 46382 0.66 0.380017
Target:  5'- gGCGGCGAGCAGCcacGCcguccgaagGCGGCa----- -3'
miRNA:   3'- -CGCCGCUCGUCGu--CG---------UGCCGcuccau -5'
26268 3' -60.8 NC_005345.2 + 45459 0.71 0.1813
Target:  5'- gGCGGcCGAGaCGGCGGCcggggugggcauguCGGCGaAGGUGg -3'
miRNA:   3'- -CGCC-GCUC-GUCGUCGu-------------GCCGC-UCCAU- -5'
26268 3' -60.8 NC_005345.2 + 45332 0.68 0.278243
Target:  5'- cCGGCGAGCuGCuGCGCGGCc----- -3'
miRNA:   3'- cGCCGCUCGuCGuCGUGCCGcuccau -5'
26268 3' -60.8 NC_005345.2 + 44370 0.68 0.258077
Target:  5'- cGCGGCGAGCccGGaaaGGCACGGgcccaccaUGAcGGUAu -3'
miRNA:   3'- -CGCCGCUCG--UCg--UCGUGCC--------GCU-CCAU- -5'
26268 3' -60.8 NC_005345.2 + 44241 0.73 0.119383
Target:  5'- uGCGGCugccGCAGCAGCuCGGCGAGc-- -3'
miRNA:   3'- -CGCCGcu--CGUCGUCGuGCCGCUCcau -5'
26268 3' -60.8 NC_005345.2 + 43911 0.7 0.204704
Target:  5'- cGCGGCGcGCAGC-GCGuCGGCGAucaGGc- -3'
miRNA:   3'- -CGCCGCuCGUCGuCGU-GCCGCU---CCau -5'
26268 3' -60.8 NC_005345.2 + 43463 0.75 0.095578
Target:  5'- gGCGGCGAGUucGCGGCGCaGCGcGGUc -3'
miRNA:   3'- -CGCCGCUCGu-CGUCGUGcCGCuCCAu -5'
26268 3' -60.8 NC_005345.2 + 43330 0.66 0.362839
Target:  5'- aGCgGGCGAGCugcuGCGcGUACGGCucgaccucGGGGUc -3'
miRNA:   3'- -CG-CCGCUCGu---CGU-CGUGCCG--------CUCCAu -5'
26268 3' -60.8 NC_005345.2 + 43112 0.67 0.317668
Target:  5'- cGCGGUGAGCuGCAGUggcugcucgucguacACGGUGGugucGGg- -3'
miRNA:   3'- -CGCCGCUCGuCGUCG---------------UGCCGCU----CCau -5'
26268 3' -60.8 NC_005345.2 + 41441 0.69 0.226555
Target:  5'- cGUaGCGGGCAGCAGCAccaccuucgguacCGGCGGGc-- -3'
miRNA:   3'- -CGcCGCUCGUCGUCGU-------------GCCGCUCcau -5'
26268 3' -60.8 NC_005345.2 + 41349 0.66 0.362839
Target:  5'- aCGGCGuccGGCGGCGGCGCaGCGcucGGc- -3'
miRNA:   3'- cGCCGC---UCGUCGUCGUGcCGCu--CCau -5'
26268 3' -60.8 NC_005345.2 + 41092 0.73 0.13326
Target:  5'- gGCGGCGAGCuugaucuGCAGCuCGugcagcugcGCGAGGUc -3'
miRNA:   3'- -CGCCGCUCGu------CGUCGuGC---------CGCUCCAu -5'
26268 3' -60.8 NC_005345.2 + 40628 0.72 0.156876
Target:  5'- --cGCGAGCcGCGGCAUGGCGAGc-- -3'
miRNA:   3'- cgcCGCUCGuCGUCGUGCCGCUCcau -5'
26268 3' -60.8 NC_005345.2 + 40487 1.08 0.000234
Target:  5'- cGCGGCGAGCAGCAGCACGGCGAGGUAg -3'
miRNA:   3'- -CGCCGCUCGUCGUCGUGCCGCUCCAU- -5'
26268 3' -60.8 NC_005345.2 + 40345 0.66 0.354454
Target:  5'- cGUGGCGGGCGacgGGUACGGCcguGGGGg- -3'
miRNA:   3'- -CGCCGCUCGUcg-UCGUGCCG---CUCCau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.