miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26268 3' -60.8 NC_005345.2 + 10597 0.76 0.068134
Target:  5'- aGCGGUggcacGAGCAGCGGCGCGGCc-GGUc -3'
miRNA:   3'- -CGCCG-----CUCGUCGUCGUGCCGcuCCAu -5'
26268 3' -60.8 NC_005345.2 + 21632 0.69 0.221343
Target:  5'- -gGGCGGGagaucgauccuCAGCGGCucgGGCGGGGUGg -3'
miRNA:   3'- cgCCGCUC-----------GUCGUCGug-CCGCUCCAU- -5'
26268 3' -60.8 NC_005345.2 + 41441 0.69 0.226555
Target:  5'- cGUaGCGGGCAGCAGCAccaccuucgguacCGGCGGGc-- -3'
miRNA:   3'- -CGcCGCUCGUCGUCGU-------------GCCGCUCcau -5'
26268 3' -60.8 NC_005345.2 + 3353 0.66 0.388807
Target:  5'- aCGGaCGAccucgcGCAGUGGUucuacgagcuggGCGGCGAGGUc -3'
miRNA:   3'- cGCC-GCU------CGUCGUCG------------UGCCGCUCCAu -5'
26268 3' -60.8 NC_005345.2 + 46997 0.74 0.106563
Target:  5'- -aGGUGAGUaucgcccGGCuGCACGGCGAGGc- -3'
miRNA:   3'- cgCCGCUCG-------UCGuCGUGCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 28401 0.74 0.10686
Target:  5'- cGCGGCG-GCAGCGGCA-GGC-AGGg- -3'
miRNA:   3'- -CGCCGCuCGUCGUCGUgCCGcUCCau -5'
26268 3' -60.8 NC_005345.2 + 13192 0.74 0.112959
Target:  5'- cCGGCccGAGCGGCAGCccgcGCGGCGAGc-- -3'
miRNA:   3'- cGCCG--CUCGUCGUCG----UGCCGCUCcau -5'
26268 3' -60.8 NC_005345.2 + 14714 0.72 0.139597
Target:  5'- gGCGGCGAGCucguGCugcacaccgaggccGGCACGGUGGugucGGUGa -3'
miRNA:   3'- -CGCCGCUCGu---CG--------------UCGUGCCGCU----CCAU- -5'
26268 3' -60.8 NC_005345.2 + 40628 0.72 0.156876
Target:  5'- --cGCGAGCcGCGGCAUGGCGAGc-- -3'
miRNA:   3'- cgcCGCUCGuCGUCGUGCCGCUCcau -5'
26268 3' -60.8 NC_005345.2 + 12540 0.7 0.215672
Target:  5'- cGCGgaGCGGGC-GCAGCGCuGGC-AGGUGg -3'
miRNA:   3'- -CGC--CGCUCGuCGUCGUG-CCGcUCCAU- -5'
26268 3' -60.8 NC_005345.2 + 37853 0.71 0.174662
Target:  5'- uGCGGUcGGUcGCGGC-CGGCGAGGc- -3'
miRNA:   3'- -CGCCGcUCGuCGUCGuGCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 14308 0.72 0.148611
Target:  5'- cGCGuGCGAGUucuGCgAGCAcguCGGCGAGGg- -3'
miRNA:   3'- -CGC-CGCUCGu--CG-UCGU---GCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 15369 0.76 0.076314
Target:  5'- gGCGGCGA-CGGCAGCGCGG--GGGUAc -3'
miRNA:   3'- -CGCCGCUcGUCGUCGUGCCgcUCCAU- -5'
26268 3' -60.8 NC_005345.2 + 13492 0.7 0.194222
Target:  5'- cGCGuCGGuGCGGUGGCGCGGCGAGc-- -3'
miRNA:   3'- -CGCcGCU-CGUCGUCGUGCCGCUCcau -5'
26268 3' -60.8 NC_005345.2 + 33530 0.75 0.08762
Target:  5'- gGCGGCGAGCcGCGGCAugcugacgacgcuCGGCGcAGGc- -3'
miRNA:   3'- -CGCCGCUCGuCGUCGU-------------GCCGC-UCCau -5'
26268 3' -60.8 NC_005345.2 + 15341 0.72 0.140744
Target:  5'- cGgGGCGuAGCGGguGUGCGGCGAaGUAn -3'
miRNA:   3'- -CgCCGC-UCGUCguCGUGCCGCUcCAU- -5'
26268 3' -60.8 NC_005345.2 + 7347 0.7 0.215672
Target:  5'- cGCGGUGuggcccGCGGUGGCGCagccgGGCGGGGg- -3'
miRNA:   3'- -CGCCGCu-----CGUCGUCGUG-----CCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 35743 0.69 0.221343
Target:  5'- gGCGGCcgaacGAGCGGCGGCAuccCGGgGcAGGa- -3'
miRNA:   3'- -CGCCG-----CUCGUCGUCGU---GCCgC-UCCau -5'
26268 3' -60.8 NC_005345.2 + 22163 0.75 0.092939
Target:  5'- uGUGGCGAGCAGC-GC-CGGCGcuGGGa- -3'
miRNA:   3'- -CGCCGCUCGUCGuCGuGCCGC--UCCau -5'
26268 3' -60.8 NC_005345.2 + 14928 0.74 0.10686
Target:  5'- cGCGGCGGcuGCAGCgGGCgGCGGCGaAGGa- -3'
miRNA:   3'- -CGCCGCU--CGUCG-UCG-UGCCGC-UCCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.