miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26268 3' -60.8 NC_005345.2 + 9579 0.69 0.233066
Target:  5'- cGCGGaaGGUAuGCGGgGCGuGCGAGGUGc -3'
miRNA:   3'- -CGCCgcUCGU-CGUCgUGC-CGCUCCAU- -5'
26268 3' -60.8 NC_005345.2 + 41441 0.69 0.226555
Target:  5'- cGUaGCGGGCAGCAGCAccaccuucgguacCGGCGGGc-- -3'
miRNA:   3'- -CGcCGCUCGUCGUCGU-------------GCCGCUCcau -5'
26268 3' -60.8 NC_005345.2 + 14308 0.72 0.148611
Target:  5'- cGCGuGCGAGUucuGCgAGCAcguCGGCGAGGg- -3'
miRNA:   3'- -CGC-CGCUCGu--CG-UCGU---GCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 22163 0.75 0.092939
Target:  5'- uGUGGCGAGCAGC-GC-CGGCGcuGGGa- -3'
miRNA:   3'- -CGCCGCUCGUCGuCGuGCCGC--UCCau -5'
26268 3' -60.8 NC_005345.2 + 30702 0.68 0.271385
Target:  5'- gGCuGCGGGUGGCcGCGgugauCGGCGAGGa- -3'
miRNA:   3'- -CGcCGCUCGUCGuCGU-----GCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 27803 0.69 0.251625
Target:  5'- uGUGGCGcaAGCcGC-GCACGGgCGAGGa- -3'
miRNA:   3'- -CGCCGC--UCGuCGuCGUGCC-GCUCCau -5'
26268 3' -60.8 NC_005345.2 + 21632 0.69 0.221343
Target:  5'- -gGGCGGGagaucgauccuCAGCGGCucgGGCGGGGUGg -3'
miRNA:   3'- cgCCGCUC-----------GUCGUCGug-CCGCUCCAU- -5'
26268 3' -60.8 NC_005345.2 + 33530 0.75 0.08762
Target:  5'- gGCGGCGAGCcGCGGCAugcugacgacgcuCGGCGcAGGc- -3'
miRNA:   3'- -CGCCGCUCGuCGUCGU-------------GCCGC-UCCau -5'
26268 3' -60.8 NC_005345.2 + 30832 0.69 0.245307
Target:  5'- cGCGGCGuggcuGCAGCAGaacacugGCcGCGAGGa- -3'
miRNA:   3'- -CGCCGCu----CGUCGUCg------UGcCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 15369 0.76 0.076314
Target:  5'- gGCGGCGA-CGGCAGCGCGG--GGGUAc -3'
miRNA:   3'- -CGCCGCUcGUCGUCGUGCCgcUCCAU- -5'
26268 3' -60.8 NC_005345.2 + 35743 0.69 0.221343
Target:  5'- gGCGGCcgaacGAGCGGCGGCAuccCGGgGcAGGa- -3'
miRNA:   3'- -CGCCG-----CUCGUCGUCGU---GCCgC-UCCau -5'
26268 3' -60.8 NC_005345.2 + 16039 0.69 0.23851
Target:  5'- cGCGGCGAGUAcgcgcuGCGGCuGCGucagaucGCGGGGUc -3'
miRNA:   3'- -CGCCGCUCGU------CGUCG-UGC-------CGCUCCAu -5'
26268 3' -60.8 NC_005345.2 + 13492 0.7 0.194222
Target:  5'- cGCGuCGGuGCGGUGGCGCGGCGAGc-- -3'
miRNA:   3'- -CGCcGCU-CGUCGUCGUGCCGCUCcau -5'
26268 3' -60.8 NC_005345.2 + 40628 0.72 0.156876
Target:  5'- --cGCGAGCcGCGGCAUGGCGAGc-- -3'
miRNA:   3'- cgcCGCUCGuCGUCGUGCCGCUCcau -5'
26268 3' -60.8 NC_005345.2 + 13192 0.74 0.112959
Target:  5'- cCGGCccGAGCGGCAGCccgcGCGGCGAGc-- -3'
miRNA:   3'- cGCCG--CUCGUCGUCG----UGCCGCUCcau -5'
26268 3' -60.8 NC_005345.2 + 46997 0.74 0.106563
Target:  5'- -aGGUGAGUaucgcccGGCuGCACGGCGAGGc- -3'
miRNA:   3'- cgCCGCUCG-------UCGuCGUGCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 34756 0.67 0.297449
Target:  5'- cGCGGCG-GCGGCGgugacGCGCGGCuacgcgaucgugcaGGGGc- -3'
miRNA:   3'- -CGCCGCuCGUCGU-----CGUGCCG--------------CUCCau -5'
26268 3' -60.8 NC_005345.2 + 6696 0.68 0.278243
Target:  5'- aCGGCGAGgGGUGGCAcgagcagcCGGCGGgcacGGUGu -3'
miRNA:   3'- cGCCGCUCgUCGUCGU--------GCCGCU----CCAU- -5'
26268 3' -60.8 NC_005345.2 + 18852 0.68 0.264663
Target:  5'- gGCaGGCGAGCAGguGCgggccgcgaucgACaGCGcAGGUGu -3'
miRNA:   3'- -CG-CCGCUCGUCguCG------------UGcCGC-UCCAU- -5'
26268 3' -60.8 NC_005345.2 + 11600 0.69 0.251625
Target:  5'- gGUGGCGuGgGGCGGcCGCuGGCGGGaGUGg -3'
miRNA:   3'- -CGCCGCuCgUCGUC-GUG-CCGCUC-CAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.