miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26268 3' -60.8 NC_005345.2 + 8740 0.75 0.095578
Target:  5'- gGUGGCGAGCGcgacgacuGCAGCAuCGGgGAGGc- -3'
miRNA:   3'- -CGCCGCUCGU--------CGUCGU-GCCgCUCCau -5'
26268 3' -60.8 NC_005345.2 + 8840 0.67 0.338099
Target:  5'- uGCcGCG-GCuGCGGCACGGUGAacGGg- -3'
miRNA:   3'- -CGcCGCuCGuCGUCGUGCCGCU--CCau -5'
26268 3' -60.8 NC_005345.2 + 8990 0.66 0.362839
Target:  5'- -gGGCGuGUgccugcccgacGGCAGCACGGUGcGGa- -3'
miRNA:   3'- cgCCGCuCG-----------UCGUCGUGCCGCuCCau -5'
26268 3' -60.8 NC_005345.2 + 9579 0.69 0.233066
Target:  5'- cGCGGaaGGUAuGCGGgGCGuGCGAGGUGc -3'
miRNA:   3'- -CGCCgcUCGU-CGUCgUGC-CGCUCCAU- -5'
26268 3' -60.8 NC_005345.2 + 9881 0.69 0.239121
Target:  5'- uCGaCGAGCAGCAGCgggccgaacucgGCGGCGAGc-- -3'
miRNA:   3'- cGCcGCUCGUCGUCG------------UGCCGCUCcau -5'
26268 3' -60.8 NC_005345.2 + 9947 0.7 0.189159
Target:  5'- gGUGuCGAGCAGCAGCuCGcGCGcGGUGa -3'
miRNA:   3'- -CGCcGCUCGUCGUCGuGC-CGCuCCAU- -5'
26268 3' -60.8 NC_005345.2 + 10597 0.76 0.068134
Target:  5'- aGCGGUggcacGAGCAGCGGCGCGGCc-GGUc -3'
miRNA:   3'- -CGCCG-----CUCGUCGUCGUGCCGcuCCAu -5'
26268 3' -60.8 NC_005345.2 + 11600 0.69 0.251625
Target:  5'- gGUGGCGuGgGGCGGcCGCuGGCGGGaGUGg -3'
miRNA:   3'- -CGCCGCuCgUCGUC-GUG-CCGCUC-CAU- -5'
26268 3' -60.8 NC_005345.2 + 11633 0.66 0.354454
Target:  5'- cCGcCGAGCAgGCAuagacgccuGCACGGCGGcGGUAg -3'
miRNA:   3'- cGCcGCUCGU-CGU---------CGUGCCGCU-CCAU- -5'
26268 3' -60.8 NC_005345.2 + 12540 0.7 0.215672
Target:  5'- cGCGgaGCGGGC-GCAGCGCuGGC-AGGUGg -3'
miRNA:   3'- -CGC--CGCUCGuCGUCGUG-CCGcUCCAU- -5'
26268 3' -60.8 NC_005345.2 + 13036 0.69 0.245307
Target:  5'- uGCGGCGAccggaucaccgGCAGCGGCAUcGUGuGGa- -3'
miRNA:   3'- -CGCCGCU-----------CGUCGUCGUGcCGCuCCau -5'
26268 3' -60.8 NC_005345.2 + 13192 0.74 0.112959
Target:  5'- cCGGCccGAGCGGCAGCccgcGCGGCGAGc-- -3'
miRNA:   3'- cGCCG--CUCGUCGUCG----UGCCGCUCcau -5'
26268 3' -60.8 NC_005345.2 + 13267 0.67 0.299646
Target:  5'- cCGGCGAGCAGCucguCGGCGAc--- -3'
miRNA:   3'- cGCCGCUCGUCGucguGCCGCUccau -5'
26268 3' -60.8 NC_005345.2 + 13492 0.7 0.194222
Target:  5'- cGCGuCGGuGCGGUGGCGCGGCGAGc-- -3'
miRNA:   3'- -CGCcGCU-CGUCGUCGUGCCGCUCcau -5'
26268 3' -60.8 NC_005345.2 + 14308 0.72 0.148611
Target:  5'- cGCGuGCGAGUucuGCgAGCAcguCGGCGAGGg- -3'
miRNA:   3'- -CGC-CGCUCGu--CG-UCGU---GCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 14595 0.68 0.292373
Target:  5'- gGCGGCaccuuuuccAGCAGCAGCGCcccgaccuucGCGAGGa- -3'
miRNA:   3'- -CGCCGc--------UCGUCGUCGUGc---------CGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 14714 0.72 0.139597
Target:  5'- gGCGGCGAGCucguGCugcacaccgaggccGGCACGGUGGugucGGUGa -3'
miRNA:   3'- -CGCCGCUCGu---CG--------------UCGUGCCGCU----CCAU- -5'
26268 3' -60.8 NC_005345.2 + 14928 0.74 0.10686
Target:  5'- cGCGGCGGcuGCAGCgGGCgGCGGCGaAGGa- -3'
miRNA:   3'- -CGCCGCU--CGUCG-UCG-UGCCGC-UCCau -5'
26268 3' -60.8 NC_005345.2 + 15267 0.66 0.377405
Target:  5'- cCGcGCGAGCGGCGucccccacgucgacGCcgaacgccuCGGCGAGGUu -3'
miRNA:   3'- cGC-CGCUCGUCGU--------------CGu--------GCCGCUCCAu -5'
26268 3' -60.8 NC_005345.2 + 15341 0.72 0.140744
Target:  5'- cGgGGCGuAGCGGguGUGCGGCGAaGUAn -3'
miRNA:   3'- -CgCCGC-UCGUCguCGUGCCGCUcCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.