miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26268 3' -60.8 NC_005345.2 + 14714 0.72 0.139597
Target:  5'- gGCGGCGAGCucguGCugcacaccgaggccGGCACGGUGGugucGGUGa -3'
miRNA:   3'- -CGCCGCUCGu---CG--------------UCGUGCCGCU----CCAU- -5'
26268 3' -60.8 NC_005345.2 + 15341 0.72 0.140744
Target:  5'- cGgGGCGuAGCGGguGUGCGGCGAaGUAn -3'
miRNA:   3'- -CgCCGC-UCGUCguCGUGCCGCUcCAU- -5'
26268 3' -60.8 NC_005345.2 + 14308 0.72 0.148611
Target:  5'- cGCGuGCGAGUucuGCgAGCAcguCGGCGAGGg- -3'
miRNA:   3'- -CGC-CGCUCGu--CG-UCGU---GCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 35844 0.72 0.148611
Target:  5'- cGCGGCGGGUGGCucGGUucgGGCGGGGg- -3'
miRNA:   3'- -CGCCGCUCGUCG--UCGug-CCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 40628 0.72 0.156876
Target:  5'- --cGCGAGCcGCGGCAUGGCGAGc-- -3'
miRNA:   3'- cgcCGCUCGuCGUCGUGCCGCUCcau -5'
26268 3' -60.8 NC_005345.2 + 6894 0.71 0.161163
Target:  5'- uGUGGauCGAGCAGCgacaGGUgaaGCGGCGAGGg- -3'
miRNA:   3'- -CGCC--GCUCGUCG----UCG---UGCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 38199 0.71 0.170054
Target:  5'- gGCGuaGGGCGGCGGCgggaACGGaCGGGGg- -3'
miRNA:   3'- -CGCcgCUCGUCGUCG----UGCC-GCUCCau -5'
26268 3' -60.8 NC_005345.2 + 37853 0.71 0.174662
Target:  5'- uGCGGUcGGUcGCGGC-CGGCGAGGc- -3'
miRNA:   3'- -CGCCGcUCGuCGUCGuGCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 45459 0.71 0.1813
Target:  5'- gGCGGcCGAGaCGGCGGCcggggugggcauguCGGCGaAGGUGg -3'
miRNA:   3'- -CGCC-GCUC-GUCGUCGu-------------GCCGC-UCCAU- -5'
26268 3' -60.8 NC_005345.2 + 30115 0.71 0.184213
Target:  5'- gGCGGCGAggcggaGCAGCGGCccgaggGCGGCgcgccacccgucGAGGUc -3'
miRNA:   3'- -CGCCGCU------CGUCGUCG------UGCCG------------CUCCAu -5'
26268 3' -60.8 NC_005345.2 + 9947 0.7 0.189159
Target:  5'- gGUGuCGAGCAGCAGCuCGcGCGcGGUGa -3'
miRNA:   3'- -CGCcGCUCGUCGUCGuGC-CGCuCCAU- -5'
26268 3' -60.8 NC_005345.2 + 27167 0.7 0.189159
Target:  5'- aGCGGCccGAGCAGUaccgGGCAuCGGCGcGGg- -3'
miRNA:   3'- -CGCCG--CUCGUCG----UCGU-GCCGCuCCau -5'
26268 3' -60.8 NC_005345.2 + 31196 0.7 0.19371
Target:  5'- cGCGGCGGguGCGGCgggugcgcacccgGGUGCGGCcGGGUGu -3'
miRNA:   3'- -CGCCGCU--CGUCG-------------UCGUGCCGcUCCAU- -5'
26268 3' -60.8 NC_005345.2 + 3028 0.7 0.19371
Target:  5'- -gGGCG-GCGGCAGCAUGcucgcuuGCGGGGg- -3'
miRNA:   3'- cgCCGCuCGUCGUCGUGC-------CGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 13492 0.7 0.194222
Target:  5'- cGCGuCGGuGCGGUGGCGCGGCGAGc-- -3'
miRNA:   3'- -CGCcGCU-CGUCGUCGUGCCGCUCcau -5'
26268 3' -60.8 NC_005345.2 + 28737 0.7 0.199403
Target:  5'- aCGGCGcccacGGCGGgaGGUACGGCGGGGc- -3'
miRNA:   3'- cGCCGC-----UCGUCg-UCGUGCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 35236 0.7 0.203101
Target:  5'- gGCGGCugguagucgucgauGGGCGGCAGUuCGGUGAuGGUc -3'
miRNA:   3'- -CGCCG--------------CUCGUCGUCGuGCCGCU-CCAu -5'
26268 3' -60.8 NC_005345.2 + 43911 0.7 0.204704
Target:  5'- cGCGGCGcGCAGC-GCGuCGGCGAucaGGc- -3'
miRNA:   3'- -CGCCGCuCGUCGuCGU-GCCGCU---CCau -5'
26268 3' -60.8 NC_005345.2 + 37236 0.7 0.204704
Target:  5'- gGCGGCGugccGUAGUAGCgggcgACGGCGGcGGUc -3'
miRNA:   3'- -CGCCGCu---CGUCGUCG-----UGCCGCU-CCAu -5'
26268 3' -60.8 NC_005345.2 + 31843 0.7 0.210126
Target:  5'- cGCGGCGGGU-GCGGCgcaccuGCGGCGAacguGGg- -3'
miRNA:   3'- -CGCCGCUCGuCGUCG------UGCCGCU----CCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.