miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26268 3' -60.8 NC_005345.2 + 2686 0.66 0.37136
Target:  5'- uGCGGCGGggcGCGGgauCAGCcUGGCGAcGGUu -3'
miRNA:   3'- -CGCCGCU---CGUC---GUCGuGCCGCU-CCAu -5'
26268 3' -60.8 NC_005345.2 + 2748 0.66 0.354454
Target:  5'- aGCGGCccgcaugugGAGCGcGCcacGCGCGGCGGccucGGUAc -3'
miRNA:   3'- -CGCCG---------CUCGU-CGu--CGUGCCGCU----CCAU- -5'
26268 3' -60.8 NC_005345.2 + 3028 0.7 0.19371
Target:  5'- -gGGCG-GCGGCAGCAUGcucgcuuGCGGGGg- -3'
miRNA:   3'- cgCCGCuCGUCGUCGUGC-------CGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 3056 0.68 0.264663
Target:  5'- gGCGGUGuggacGUAGCGGaucguguCGGCGAGGa- -3'
miRNA:   3'- -CGCCGCu----CGUCGUCgu-----GCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 3353 0.66 0.388807
Target:  5'- aCGGaCGAccucgcGCAGUGGUucuacgagcuggGCGGCGAGGUc -3'
miRNA:   3'- cGCC-GCU------CGUCGUCG------------UGCCGCUCCAu -5'
26268 3' -60.8 NC_005345.2 + 3421 0.77 0.064367
Target:  5'- gGCGGCGGGCgcGGCGGCggGCGGCGAugcGGg- -3'
miRNA:   3'- -CGCCGCUCG--UCGUCG--UGCCGCU---CCau -5'
26268 3' -60.8 NC_005345.2 + 3877 0.74 0.098288
Target:  5'- aCGcCGAGUgccuGCAGCGCGGCGAGGg- -3'
miRNA:   3'- cGCcGCUCGu---CGUCGUGCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 4121 0.67 0.314608
Target:  5'- aGCGGUuggcguucGAGCGGCuGCucGCGGCGcucgucgagcGGGUGu -3'
miRNA:   3'- -CGCCG--------CUCGUCGuCG--UGCCGC----------UCCAU- -5'
26268 3' -60.8 NC_005345.2 + 4190 0.68 0.264663
Target:  5'- gGCGGCaGGCcgugcaGGCGGCGCGGCaGAugcugcGGUAc -3'
miRNA:   3'- -CGCCGcUCG------UCGUCGUGCCG-CU------CCAU- -5'
26268 3' -60.8 NC_005345.2 + 4364 0.68 0.271385
Target:  5'- -gGGCGGGCgGGCcGCuCGGUGGGGg- -3'
miRNA:   3'- cgCCGCUCG-UCGuCGuGCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 5065 0.66 0.361994
Target:  5'- cGCuGUGAGCAGCuGCAgcccaucggcgcuCGGCG-GGUc -3'
miRNA:   3'- -CGcCGCUCGUCGuCGU-------------GCCGCuCCAu -5'
26268 3' -60.8 NC_005345.2 + 5259 0.69 0.221343
Target:  5'- gGCGuGaCGGGCGGCAGgGCGGgcuCGGGGg- -3'
miRNA:   3'- -CGC-C-GCUCGUCGUCgUGCC---GCUCCau -5'
26268 3' -60.8 NC_005345.2 + 5328 0.67 0.322299
Target:  5'- cCGGCGAagcGCuGCAGUGCGGUGccGUGg -3'
miRNA:   3'- cGCCGCU---CGuCGUCGUGCCGCucCAU- -5'
26268 3' -60.8 NC_005345.2 + 6532 0.7 0.210126
Target:  5'- cGgGGCgGGGCggGGCGGgGCGGUGGGGg- -3'
miRNA:   3'- -CgCCG-CUCG--UCGUCgUGCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 6696 0.68 0.278243
Target:  5'- aCGGCGAGgGGUGGCAcgagcagcCGGCGGgcacGGUGu -3'
miRNA:   3'- cGCCGCUCgUCGUCGU--------GCCGCU----CCAU- -5'
26268 3' -60.8 NC_005345.2 + 6894 0.71 0.161163
Target:  5'- uGUGGauCGAGCAGCgacaGGUgaaGCGGCGAGGg- -3'
miRNA:   3'- -CGCC--GCUCGUCG----UCG---UGCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 7347 0.7 0.215672
Target:  5'- cGCGGUGuggcccGCGGUGGCGCagccgGGCGGGGg- -3'
miRNA:   3'- -CGCCGCu-----CGUCGUCGUG-----CCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 7514 0.66 0.362839
Target:  5'- uCGGUGGGCGuGCuGC-CGGCGGcGGUc -3'
miRNA:   3'- cGCCGCUCGU-CGuCGuGCCGCU-CCAu -5'
26268 3' -60.8 NC_005345.2 + 7650 0.66 0.37136
Target:  5'- -aGGCGuGCGGCAGaGCGGCcgcugugaaGGGGa- -3'
miRNA:   3'- cgCCGCuCGUCGUCgUGCCG---------CUCCau -5'
26268 3' -60.8 NC_005345.2 + 8317 0.8 0.035223
Target:  5'- gGCGGCGcGCAGCAGCAgcguucCGGCGGcGGUGc -3'
miRNA:   3'- -CGCCGCuCGUCGUCGU------GCCGCU-CCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.